Fondufe-Mittendorf YN - Search Results

1

Involvement of PARP1 in the regulation of alternative splicing.

Matveeva E, Maiorano J, Zhang Q, Eteleeb AM, Convertini P, Chen J, Infantino V, Stamm S, Wang J, Rouchka EC, Fondufe-Mittendorf YN. Matveeva E, et al. Cell Discov. 2016 Feb 16;2:15046. doi: 10.1038/celldisc.2015.46. eCollection 2016. Cell Discov. 2016. PMID: 27462443 Free PMC article.

2

Predicting nucleosome positioning using a duration Hidden Markov Model.

Xi L, Fondufe-Mittendorf Y, Xia L, Flatow J, Widom J, Wang JP. Xi L, et al. BMC Bioinformatics. 2010 Jun 24;11:346. doi: 10.1186/1471-2105-11-346. BMC Bioinformatics. 2010. PMID: 20576140 Free PMC article.

3

Archaeal nucleosome positioning in vivo and in vitro is directed by primary sequence motifs.

Nalabothula N, Xi L, Bhattacharyya S, Widom J, Wang JP, Reeve JN, Santangelo TJ, Fondufe-Mittendorf YN. Nalabothula N, et al. BMC Genomics. 2013 Jun 10;14:391. doi: 10.1186/1471-2164-14-391. BMC Genomics. 2013. PMID: 23758892 Free PMC article.

4

The chromatin architectural proteins HMGD1 and H1 bind reciprocally and have opposite effects on chromatin structure and gene regulation.

Nalabothula N, McVicker G, Maiorano J, Martin R, Pritchard JK, Fondufe-Mittendorf YN. Nalabothula N, et al. BMC Genomics. 2014 Feb 1;15:92. doi: 10.1186/1471-2164-15-92. BMC Genomics. 2014. PMID: 24484546 Free PMC article.

5

Sudemycin E influences alternative splicing and changes chromatin modifications.

Convertini P, Shen M, Potter PM, Palacios G, Lagisetti C, de la Grange P, Horbinski C, Fondufe-Mittendorf YN, Webb TR, Stamm S. Convertini P, et al. Nucleic Acids Res. 2014 Apr;42(8):4947-61. doi: 10.1093/nar/gku151. Epub 2014 Mar 11. Nucleic Acids Res. 2014. PMID: 24623796 Free PMC article.

6

Inorganic Arsenic-induced cellular transformation is coupled with genome wide changes in chromatin structure, transcriptome and splicing patterns.

Riedmann C, Ma Y, Melikishvili M, Godfrey SG, Zhang Z, Chen KC, Rouchka EC, Fondufe-Mittendorf YN. Riedmann C, et al. BMC Genomics. 2015 Mar 19;16(1):212. doi: 10.1186/s12864-015-1295-9. BMC Genomics. 2015. PMID: 25879800 Free PMC article.

7

Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation.

Nalabothula N, Al-jumaily T, Eteleeb AM, Flight RM, Xiaorong S, Moseley H, Rouchka EC, Fondufe-Mittendorf YN. Nalabothula N, et al. PLoS One. 2015 Aug 25;10(8):e0135410. doi: 10.1371/journal.pone.0135410. eCollection 2015. PLoS One. 2015. PMID: 26305327 Free PMC article.

8

A comparison of nucleosome organization in Drosophila cell lines.

Martin RL, Maiorano J, Beitel GJ, Marko JF, McVicker G, Fondufe-Mittendorf YN. Martin RL, et al. PLoS One. 2017 Jun 1;12(6):e0178590. doi: 10.1371/journal.pone.0178590. eCollection 2017. PLoS One. 2017. PMID: 28570602 Free PMC article.

9

Methodology to Identify Poly-ADP-Ribose Polymerase 1 (PARP1)-mRNA Targets by PAR-CLiP.

Melikishvili M, Matveeva E, Fondufe-Mittendorf Y. Melikishvili M, et al. Methods Mol Biol. 2017;1608:211-228. doi: 10.1007/978-1-4939-6993-7_15. Methods Mol Biol. 2017. PMID: 28695513

10

Erratum to: Methodology to Identify Poly-ADP-Ribose Polymerase 1 (PARP1)-mRNA Targets by PAR-CLiP.

Melikishvili M, Matveeva E, Fondufe-Mittendorf Y. Melikishvili M, et al. Methods Mol Biol. 2017;1608:E1. doi: 10.1007/978-1-4939-6993-7_30. Methods Mol Biol. 2017. PMID: 28956326 No abstract available.

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