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Page 1
Anisotropy of B-DNA Groove Bending.
Ma N, van der Vaart A. Ma N, et al. Among authors: van der vaart a. J Am Chem Soc. 2016 Aug 10;138(31):9951-8. doi: 10.1021/jacs.6b05136. Epub 2016 Aug 1. J Am Chem Soc. 2016. PMID: 27435602
Free energy simulation of helical transitions.
Ma N, Chung YH, van der Vaart A. Ma N, et al. Among authors: van der vaart a. J Comput Chem. 2013 Mar 30;34(8):640-5. doi: 10.1002/jcc.23174. Epub 2012 Nov 5. J Comput Chem. 2013. PMID: 23125002
DNA binding and bending by Sac7d is stepwise.
Spiriti J, van der Vaart A. Spiriti J, et al. Among authors: van der vaart a. Chembiochem. 2013 Aug 19;14(12):1434-7. doi: 10.1002/cbic.201300264. Epub 2013 Jul 12. Chembiochem. 2013. PMID: 23853062
Modeling, synthesis, and biological evaluation of potential retinoid X receptor (RXR) selective agonists: novel analogues of 4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)ethynyl]benzoic acid (bexarotene) and (E)-3-(3-(1,2,3,4-tetrahydro-1,1,4,4,6-pentamethylnaphthalen-7-yl)-4-hydroxyphenyl)acrylic acid (CD3254).
Jurutka PW, Kaneko I, Yang J, Bhogal JS, Swierski JC, Tabacaru CR, Montano LA, Huynh CC, Jama RA, Mahelona RD, Sarnowski JT, Marcus LM, Quezada A, Lemming B, Tedesco MA, Fischer AJ, Mohamed SA, Ziller JW, Ma N, Gray GM, van der Vaart A, Marshall PA, Wagner CE. Jurutka PW, et al. Among authors: van der vaart a. J Med Chem. 2013 Nov 14;56(21):8432-54. doi: 10.1021/jm4008517. Epub 2013 Nov 1. J Med Chem. 2013. PMID: 24180745 Free PMC article.
Enhanced sampling simulations of DNA step parameters.
Karolak A, van der Vaart A. Karolak A, et al. Among authors: van der vaart a. J Comput Chem. 2014 Dec 15;35(32):2297-304. doi: 10.1002/jcc.23751. Epub 2014 Oct 10. J Comput Chem. 2014. PMID: 25303338
Analysis of differential secondary effects of novel rexinoids: select rexinoid X receptor ligands demonstrate differentiated side effect profiles.
Marshall PA, Jurutka PW, Wagner CE, van der Vaart A, Kaneko I, Chavez PI, Ma N, Bhogal JS, Shahani P, Swierski JC, MacNeill M. Marshall PA, et al. Among authors: van der vaart a. Pharmacol Res Perspect. 2015 Mar;3(2):e00122. doi: 10.1002/prp2.122. Epub 2015 Mar 16. Pharmacol Res Perspect. 2015. PMID: 26038698 Free PMC article.
DNA Bending through Large Angles Is Aided by Ionic Screening.
Spiriti J, Kamberaj H, de Graff AM, Thorpe MF, van der Vaart A. Spiriti J, et al. Among authors: van der vaart a. J Chem Theory Comput. 2012 Jun 12;8(6):2145-56. doi: 10.1021/ct300177r. Epub 2012 May 10. J Chem Theory Comput. 2012. PMID: 26593845
148 results