Haibe-Kains B - Search Results

1

Assessment of pharmacogenomic agreement.

Safikhani Z, El-Hachem N, Quevedo R, Smirnov P, Goldenberg A, Juul Birkbak N, Mason C, Hatzis C, Shi L, Aerts HJ, Quackenbush J, Haibe-Kains B. Safikhani Z, et al. F1000Res. 2016 May 9;5:825. doi: 10.12688/f1000research.8705.1. eCollection 2016. F1000Res. 2016. PMID: 27408686 Free PMC article.

2

survcomp: an R/Bioconductor package for performance assessment and comparison of survival models.

Schröder MS, Culhane AC, Quackenbush J, Haibe-Kains B. Schröder MS, et al. Bioinformatics. 2011 Nov 15;27(22):3206-8. doi: 10.1093/bioinformatics/btr511. Epub 2011 Sep 7. Bioinformatics. 2011. PMID: 21903630 Free PMC article.

3

Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks.

Haibe-Kains B, Olsen C, Djebbari A, Bontempi G, Correll M, Bouton C, Quackenbush J. Haibe-Kains B, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D866-75. doi: 10.1093/nar/gkr1050. Epub 2011 Nov 16. Nucleic Acids Res. 2012. PMID: 22096235 Free PMC article.

4

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures.

Culhane AC, Schröder MS, Sultana R, Picard SC, Martinelli EN, Kelly C, Haibe-Kains B, Kapushesky M, St Pierre AA, Flahive W, Picard KC, Gusenleitner D, Papenhausen G, O'Connor N, Correll M, Quackenbush J. Culhane AC, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D1060-6. doi: 10.1093/nar/gkr901. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110038 Free PMC article.

5

A three-gene model to robustly identify breast cancer molecular subtypes.

Haibe-Kains B, Desmedt C, Loi S, Culhane AC, Bontempi G, Quackenbush J, Sotiriou C. Haibe-Kains B, et al. J Natl Cancer Inst. 2012 Feb 22;104(4):311-25. doi: 10.1093/jnci/djr545. Epub 2012 Jan 18. J Natl Cancer Inst. 2012. PMID: 22262870 Free PMC article.

6

Angiogenic mRNA and microRNA gene expression signature predicts a novel subtype of serous ovarian cancer.

Bentink S, Haibe-Kains B, Risch T, Fan JB, Hirsch MS, Holton K, Rubio R, April C, Chen J, Wickham-Garcia E, Liu J, Culhane A, Drapkin R, Quackenbush J, Matulonis UA. Bentink S, et al. PLoS One. 2012;7(2):e30269. doi: 10.1371/journal.pone.0030269. Epub 2012 Feb 13. PLoS One. 2012. PMID: 22348002 Free PMC article.

7

MicroRNA paraffin-based studies in osteosarcoma reveal reproducible independent prognostic profiles at 14q32.

Kelly AD, Haibe-Kains B, Janeway KA, Hill KE, Howe E, Goldsmith J, Kurek K, Perez-Atayde AR, Francoeur N, Fan JB, April C, Schneider H, Gebhardt MC, Culhane A, Quackenbush J, Spentzos D. Kelly AD, et al. Genome Med. 2013 Jan 22;5(1):2. doi: 10.1186/gm406. eCollection 2013. Genome Med. 2013. PMID: 23339462 Free PMC article.

8

Comparison and validation of genomic predictors for anticancer drug sensitivity.

Papillon-Cavanagh S, De Jay N, Hachem N, Olsen C, Bontempi G, Aerts HJ, Quackenbush J, Haibe-Kains B. Papillon-Cavanagh S, et al. J Am Med Inform Assoc. 2013 Jul-Aug;20(4):597-602. doi: 10.1136/amiajnl-2012-001442. Epub 2013 Jan 26. J Am Med Inform Assoc. 2013. PMID: 23355484 Free PMC article.

9

Stem cell-like gene expression in ovarian cancer predicts type II subtype and prognosis.

Schwede M, Spentzos D, Bentink S, Hofmann O, Haibe-Kains B, Harrington D, Quackenbush J, Culhane AC. Schwede M, et al. PLoS One. 2013;8(3):e57799. doi: 10.1371/journal.pone.0057799. Epub 2013 Mar 11. PLoS One. 2013. PMID: 23536770 Free PMC article.

10

mRMRe: an R package for parallelized mRMR ensemble feature selection.

De Jay N, Papillon-Cavanagh S, Olsen C, El-Hachem N, Bontempi G, Haibe-Kains B. De Jay N, et al. Bioinformatics. 2013 Sep 15;29(18):2365-8. doi: 10.1093/bioinformatics/btt383. Epub 2013 Jul 3. Bioinformatics. 2013. PMID: 23825369

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