Fernandez-Fuentes N - Search Results

1

MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins.

Kara A, Vickers M, Swain M, Whitworth DE, Fernandez-Fuentes N. Kara A, et al. Bioinformatics. 2016 Nov 1;32(21):3339-3341. doi: 10.1093/bioinformatics/btw403. Epub 2016 Jul 4. Bioinformatics. 2016. PMID: 27378293

2

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design.

Bonet J, Segura J, Planas-Iglesias J, Oliva B, Fernandez-Fuentes N. Bonet J, et al. Bioinformatics. 2014 Jul 1;30(13):1935-6. doi: 10.1093/bioinformatics/btu129. Epub 2014 Mar 6. Bioinformatics. 2014. PMID: 24603983

3

Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor.

Kara A, Vickers M, Swain M, Whitworth DE, Fernandez-Fuentes N. Kara A, et al. BMC Bioinformatics. 2015 Sep 18;16:297. doi: 10.1186/s12859-015-0741-7. BMC Bioinformatics. 2015. PMID: 26384938 Free PMC article.

4

On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.

Marín-López MA, Planas-Iglesias J, Aguirre-Plans J, Bonet J, Garcia-Garcia J, Fernandez-Fuentes N, Oliva B. Marín-López MA, et al. Bioinformatics. 2018 Feb 15;34(4):592-598. doi: 10.1093/bioinformatics/btx616. Bioinformatics. 2018. PMID: 29028891 Free PMC article.

5

In silico characterisation of the complete Ly6 protein family in Fasciola gigantica supported through transcriptomics of the newly-excysted juveniles.

Davey SD, Chalmers IW, Fernandez-Fuentes N, Swain MT, Smith D, Abbas Abidi SM, Saifullah MK, Raman M, Ravikumar G, McVeigh P, Maule AG, Brophy PM, Morphew RM. Davey SD, et al. Mol Omics. 2022 Jan 17;18(1):45-56. doi: 10.1039/d1mo00254f. Mol Omics. 2022. PMID: 34781332 Free PMC article.

6

A holistic in silico approach to predict functional sites in protein structures.

Segura J, Jones PF, Fernandez-Fuentes N. Segura J, et al. Bioinformatics. 2012 Jul 15;28(14):1845-50. doi: 10.1093/bioinformatics/bts269. Epub 2012 May 4. Bioinformatics. 2012. PMID: 22563069

7

iFrag: A Protein-Protein Interface Prediction Server Based on Sequence Fragments.

Garcia-Garcia J, Valls-Comamala V, Guney E, Andreu D, Muñoz FJ, Fernandez-Fuentes N, Oliva B. Garcia-Garcia J, et al. J Mol Biol. 2017 Feb 3;429(3):382-389. doi: 10.1016/j.jmb.2016.11.034. Epub 2016 Dec 10. J Mol Biol. 2017. PMID: 27956148

8

SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions.

Aguirre-Plans J, Meseguer A, Molina-Fernandez R, Marín-López MA, Jumde G, Casanova K, Bonet J, Fornes O, Fernandez-Fuentes N, Oliva B. Aguirre-Plans J, et al. BMC Bioinformatics. 2021 Jan 6;22(1):4. doi: 10.1186/s12859-020-03770-5. BMC Bioinformatics. 2021. PMID: 33407073 Free PMC article.

9

A modular perspective of protein structures: application to fragment based loop modeling.

Fernandez-Fuentes N, Fiser A. Fernandez-Fuentes N, et al. Methods Mol Biol. 2013;932:141-58. doi: 10.1007/978-1-62703-065-6_9. Methods Mol Biol. 2013. PMID: 22987351 Free PMC article.

10

Knowledge-based modeling of peptides at protein interfaces: PiPreD.

Oliva B, Fernandez-Fuentes N. Oliva B, et al. Bioinformatics. 2015 May 1;31(9):1405-10. doi: 10.1093/bioinformatics/btu838. Epub 2014 Dec 23. Bioinformatics. 2015. PMID: 25540186

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