Weng Z - Search Results

1

Extensive sequencing of seven human genomes to characterize benchmark reference materials.

Zook JM, Catoe D, McDaniel J, Vang L, Spies N, Sidow A, Weng Z, Liu Y, Mason CE, Alexander N, Henaff E, McIntyre AB, Chandramohan D, Chen F, Jaeger E, Moshrefi A, Pham K, Stedman W, Liang T, Saghbini M, Dzakula Z, Hastie A, Cao H, Deikus G, Schadt E, Sebra R, Bashir A, Truty RM, Chang CC, Gulbahce N, Zhao K, Ghosh S, Hyland F, Fu Y, Chaisson M, Xiao C, Trow J, Sherry ST, Zaranek AW, Ball M, Bobe J, Estep P, Church GM, Marks P, Kyriazopoulou-Panagiotopoulou S, Zheng GX, Schnall-Levin M, Ordonez HS, Mudivarti PA, Giorda K, Sheng Y, Rypdal KB, Salit M. Zook JM, et al. Among authors: weng z. Sci Data. 2016 Jun 7;3:160025. doi: 10.1038/sdata.2016.25. Sci Data. 2016. PMID: 27271295 Free PMC article.

2

Genome-wide reconstruction of complex structural variants using read clouds.

Spies N, Weng Z, Bishara A, McDaniel J, Catoe D, Zook JM, Salit M, West RB, Batzoglou S, Sidow A. Spies N, et al. Among authors: weng z. Nat Methods. 2017 Sep;14(9):915-920. doi: 10.1038/nmeth.4366. Epub 2017 Jul 17. Nat Methods. 2017. PMID: 28714986 Free PMC article.

3

Assessment of human diploid genome assembly with 10x Linked-Reads data.

Zhang L, Zhou X, Weng Z, Sidow A. Zhang L, et al. Among authors: weng z. Gigascience. 2019 Nov 1;8(11):giz141. doi: 10.1093/gigascience/giz141. Gigascience. 2019. PMID: 31769805 Free PMC article.

4

De novo diploid genome assembly for genome-wide structural variant detection.

Zhang L, Zhou X, Weng Z, Sidow A. Zhang L, et al. Among authors: weng z. NAR Genom Bioinform. 2019 Dec 6;2(1):lqz018. doi: 10.1093/nargab/lqz018. eCollection 2020 Mar. NAR Genom Bioinform. 2019. PMID: 33575568 Free PMC article.

5

Read clouds uncover variation in complex regions of the human genome.

Bishara A, Liu Y, Weng Z, Kashef-Haghighi D, Newburger DE, West R, Sidow A, Batzoglou S. Bishara A, et al. Among authors: weng z. Genome Res. 2015 Oct;25(10):1570-80. doi: 10.1101/gr.191189.115. Epub 2015 Aug 18. Genome Res. 2015. PMID: 26286554 Free PMC article.

6

Aquila enables reference-assisted diploid personal genome assembly and comprehensive variant detection based on linked reads.

Zhou X, Zhang L, Weng Z, Dill DL, Sidow A. Zhou X, et al. Among authors: weng z. Nat Commun. 2021 Feb 17;12(1):1077. doi: 10.1038/s41467-021-21395-x. Nat Commun. 2021. PMID: 33597536 Free PMC article.

7

Comprehensive genomic characterization of breast tumors with BRCA1 and BRCA2 mutations.

Lal A, Ramazzotti D, Weng Z, Liu K, Ford JM, Sidow A. Lal A, et al. Among authors: weng z. BMC Med Genomics. 2019 Jun 10;12(1):84. doi: 10.1186/s12920-019-0545-0. BMC Med Genomics. 2019. PMID: 31182087 Free PMC article.

8

Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia.

Weng Z, Spies N, Zhu SX, Newburger DE, Kashef-Haghighi D, Batzoglou S, Sidow A, West RB. Weng Z, et al. Genome Med. 2015 Apr 9;7(1):28. doi: 10.1186/s13073-015-0146-2. eCollection 2015. Genome Med. 2015. PMID: 25918554 Free PMC article.

9

High-quality genome sequences of uncultured microbes by assembly of read clouds.

Bishara A, Moss EL, Kolmogorov M, Parada AE, Weng Z, Sidow A, Dekas AE, Batzoglou S, Bhatt AS. Bishara A, et al. Among authors: weng z. Nat Biotechnol. 2018 Oct 15:10.1038/nbt.4266. doi: 10.1038/nbt.4266. Online ahead of print. Nat Biotechnol. 2018. PMID: 30320765 Free PMC article.

10

3'-end sequencing for expression quantification (3SEQ) from archival tumor samples.

Beck AH, Weng Z, Witten DM, Zhu S, Foley JW, Lacroute P, Smith CL, Tibshirani R, van de Rijn M, Sidow A, West RB. Beck AH, et al. Among authors: weng z. PLoS One. 2010 Jan 19;5(1):e8768. doi: 10.1371/journal.pone.0008768. PLoS One. 2010. PMID: 20098735 Free PMC article.

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