Sim AY - Search Results

1

In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation.

Aw JG, Shen Y, Wilm A, Sun M, Lim XN, Boon KL, Tapsin S, Chan YS, Tan CP, Sim AY, Zhang T, Susanto TT, Fu Z, Nagarajan N, Wan Y. Aw JG, et al. Among authors: sim ay. Mol Cell. 2016 May 19;62(4):603-17. doi: 10.1016/j.molcel.2016.04.028. Epub 2016 May 12. Mol Cell. 2016. PMID: 27184079 Free article.

2

Structure mapping of dengue and Zika viruses reveals functional long-range interactions.

Huber RG, Lim XN, Ng WC, Sim AYL, Poh HX, Shen Y, Lim SY, Sundstrom KB, Sun X, Aw JG, Too HK, Boey PH, Wilm A, Chawla T, Choy MM, Jiang L, de Sessions PF, Loh XJ, Alonso S, Hibberd M, Nagarajan N, Ooi EE, Bond PJ, Sessions OM, Wan Y. Huber RG, et al. Nat Commun. 2019 Mar 29;10(1):1408. doi: 10.1038/s41467-019-09391-8. Nat Commun. 2019. PMID: 30926818 Free PMC article.

3

Topology independent comparison of RNA 3D structures using the CLICK algorithm.

Nguyen MN, Sim AY, Wan Y, Madhusudhan MS, Verma C. Nguyen MN, et al. Among authors: sim ay. Nucleic Acids Res. 2017 Jan 9;45(1):e5. doi: 10.1093/nar/gkw819. Epub 2016 Sep 14. Nucleic Acids Res. 2017. PMID: 27634929 Free PMC article.

4

Tertiary Element Interaction in HIV-1 TAR.

Krawczyk K, Sim AY, Knapp B, Deane CM, Minary P. Krawczyk K, et al. Among authors: sim ay. J Chem Inf Model. 2016 Sep 26;56(9):1746-54. doi: 10.1021/acs.jcim.6b00152. Epub 2016 Aug 17. J Chem Inf Model. 2016. PMID: 27500460

5

Nucleic acid polymeric properties and electrostatics: Directly comparing theory and simulation with experiment.

Sim AYL. Sim AYL. Adv Colloid Interface Sci. 2016 Jun;232:49-56. doi: 10.1016/j.cis.2015.09.008. Epub 2015 Oct 9. Adv Colloid Interface Sci. 2016. PMID: 26482088 Review.

6

Modeling the Structure of Keratin 1 and 10 Terminal Domains and their Misassembly in Keratoderma.

Badowski C, Sim AYL, Verma C, Szeverényi I, Natesavelalar C, Terron-Kwiatkowski A, Harper J, O'Toole EA, Lane EB. Badowski C, et al. J Invest Dermatol. 2017 Sep;137(9):1914-1923. doi: 10.1016/j.jid.2017.03.038. Epub 2017 May 16. J Invest Dermatol. 2017. PMID: 28526297 Free article.

7

How does a hydrocarbon staple affect peptide hydrophobicity?

Sim AY, Verma C. Sim AY, et al. J Comput Chem. 2015 Apr 15;36(10):773-84. doi: 10.1002/jcc.23859. Epub 2015 Feb 23. J Comput Chem. 2015. PMID: 25706509

8

Mechanism of Stapled Peptide Binding to MDM2: Possible Consequences for Peptide Design.

Sim AY, Joseph T, Lane DP, Verma C. Sim AY, et al. J Chem Theory Comput. 2014 Apr 8;10(4):1753-61. doi: 10.1021/ct4009238. J Chem Theory Comput. 2014. PMID: 26580383

9

Targeting YAP/TAZ-TEAD protein-protein interactions using fragment-based and computational modeling approaches.

Kaan HYK, Sim AYL, Tan SKJ, Verma C, Song H. Kaan HYK, et al. PLoS One. 2017 Jun 1;12(6):e0178381. doi: 10.1371/journal.pone.0178381. eCollection 2017. PLoS One. 2017. PMID: 28570566 Free PMC article.

10

R248Q mutation--Beyond p53-DNA binding.

Ng JW, Lama D, Lukman S, Lane DP, Verma CS, Sim AY. Ng JW, et al. Among authors: sim ay. Proteins. 2015 Dec;83(12):2240-50. doi: 10.1002/prot.24940. Epub 2015 Oct 27. Proteins. 2015. PMID: 26442703

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