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XenMine: A genomic interaction tool for the Xenopus community.
Reid CD, Karra K, Chang J, Piskol R, Li Q, Li JB, Cherry JM, Baker JC. Reid CD, et al. Among authors: karra k. Dev Biol. 2017 Jun 15;426(2):155-164. doi: 10.1016/j.ydbio.2016.02.034. Epub 2016 May 4. Dev Biol. 2017. PMID: 27157655 Free article.
Saccharomyces genome database provides new regulation data.
Costanzo MC, Engel SR, Wong ED, Lloyd P, Karra K, Chan ET, Weng S, Paskov KM, Roe GR, Binkley G, Hitz BC, Cherry JM. Costanzo MC, et al. Among authors: karra k. Nucleic Acids Res. 2014 Jan;42(Database issue):D717-25. doi: 10.1093/nar/gkt1158. Epub 2013 Nov 21. Nucleic Acids Res. 2014. PMID: 24265222 Free PMC article.
Saccharomyces genome database informs human biology.
Skrzypek MS, Nash RS, Wong ED, MacPherson KA, Hellerstedt ST, Engel SR, Karra K, Weng S, Sheppard TK, Binkley G, Simison M, Miyasato SR, Cherry JM. Skrzypek MS, et al. Among authors: karra k. Nucleic Acids Res. 2018 Jan 4;46(D1):D736-D742. doi: 10.1093/nar/gkx1112. Nucleic Acids Res. 2018. PMID: 29140510 Free PMC article.
Updated regulation curation model at the Saccharomyces Genome Database.
Engel SR, Skrzypek MS, Hellerstedt ST, Wong ED, Nash RS, Weng S, Binkley G, Sheppard TK, Karra K, Cherry JM. Engel SR, et al. Among authors: karra k. Database (Oxford). 2018 Jan 1;2018:bay007. doi: 10.1093/database/bay007. Database (Oxford). 2018. PMID: 29688362 Free PMC article.
Saccharomyces Genome Database: the genomics resource of budding yeast.
Cherry JM, Hong EL, Amundsen C, Balakrishnan R, Binkley G, Chan ET, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Karra K, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Simison M, Weng S, Wong ED. Cherry JM, et al. Among authors: karra k. Nucleic Acids Res. 2012 Jan;40(Database issue):D700-5. doi: 10.1093/nar/gkr1029. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110037 Free PMC article.
H3K4me3 breadth is linked to cell identity and transcriptional consistency.
Benayoun BA, Pollina EA, Ucar D, Mahmoudi S, Karra K, Wong ED, Devarajan K, Daugherty AC, Kundaje AB, Mancini E, Hitz BC, Gupta R, Rando TA, Baker JC, Snyder MP, Cherry JM, Brunet A. Benayoun BA, et al. Among authors: karra k. Cell. 2014 Jul 31;158(3):673-88. doi: 10.1016/j.cell.2014.06.027. Cell. 2014. PMID: 25083876 Free PMC article.
The Saccharomyces Genome Database Variant Viewer.
Sheppard TK, Hitz BC, Engel SR, Song G, Balakrishnan R, Binkley G, Costanzo MC, Dalusag KS, Demeter J, Hellerstedt ST, Karra K, Nash RS, Paskov KM, Skrzypek MS, Weng S, Wong ED, Cherry JM. Sheppard TK, et al. Among authors: karra k. Nucleic Acids Res. 2016 Jan 4;44(D1):D698-702. doi: 10.1093/nar/gkv1250. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26578556 Free PMC article.
35 results