Machiraju R - Search Results

1

Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes.

Wang J, Xia S, Arand B, Zhu H, Machiraju R, Huang K, Ji H, Qian J. Wang J, et al. Among authors: machiraju r. PLoS Comput Biol. 2016 Apr 21;12(4):e1004892. doi: 10.1371/journal.pcbi.1004892. eCollection 2016 Apr. PLoS Comput Biol. 2016. PMID: 27100869 Free PMC article.

2

Identify condition-specific gene co-expression networks.

Kalluru V, Machiraju R, Huang K. Kalluru V, et al. Among authors: machiraju r. Int J Comput Biol Drug Des. 2013;6(1-2):50-9. doi: 10.1504/IJCBDD.2013.052201. Epub 2013 Feb 21. Int J Comput Biol Drug Des. 2013. PMID: 23428473

3

Breast cancer patient stratification using a molecular regularized consensus clustering method.

Wang C, Machiraju R, Huang K. Wang C, et al. Among authors: machiraju r. Methods. 2014 Jun 1;67(3):304-12. doi: 10.1016/j.ymeth.2014.03.005. Epub 2014 Mar 18. Methods. 2014. PMID: 24657666 Free PMC article.

4

Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types.

Meng N, Machiraju R, Huang K. Meng N, et al. Among authors: machiraju r. BMC Bioinformatics. 2016 Dec 23;17(Suppl 17):534. doi: 10.1186/s12859-016-1346-5. BMC Bioinformatics. 2016. PMID: 28155643 Free PMC article.

5

Building trans-omics evidence: using imaging and 'omics' to characterize cancer profiles.

Srivastava A, Kulkarni C, Mallick P, Huang K, Machiraju R. Srivastava A, et al. Among authors: machiraju r. Pac Symp Biocomput. 2018;23:377-387. Pac Symp Biocomput. 2018. PMID: 29218898 Free article.

6

iGPSe: a visual analytic system for integrative genomic based cancer patient stratification.

Ding H, Wang C, Huang K, Machiraju R. Ding H, et al. Among authors: machiraju r. BMC Bioinformatics. 2014 Jul 10;15:203. doi: 10.1186/1471-2105-15-203. BMC Bioinformatics. 2014. PMID: 25000928 Free PMC article.

7

Identifying survival associated morphological features of triple negative breast cancer using multiple datasets.

Wang C, Pécot T, Zynger DL, Machiraju R, Shapiro CL, Huang K. Wang C, et al. Among authors: machiraju r. J Am Med Inform Assoc. 2013 Jul-Aug;20(4):680-7. doi: 10.1136/amiajnl-2012-001538. Epub 2013 Apr 12. J Am Med Inform Assoc. 2013. PMID: 23585272 Free PMC article.

8

Integrative cancer patient stratification via subspace merging.

Ding H, Sharpnack M, Wang C, Huang K, Machiraju R. Ding H, et al. Among authors: machiraju r. Bioinformatics. 2019 May 15;35(10):1653-1659. doi: 10.1093/bioinformatics/bty866. Bioinformatics. 2019. PMID: 30329022 Free PMC article.

9

PTR Explorer: An approach to identify and explore Post Transcriptional Regulatory mechanisms using proteogenomics.

Srivastava A, Sharpnack M, Huang K, Mallick P, Machiraju R. Srivastava A, et al. Among authors: machiraju r. Pac Symp Biocomput. 2020;25:475-486. Pac Symp Biocomput. 2020. PMID: 31797620 Free article.

10

Non-parametric population analysis of cellular phenotypes.

Singh S, Janoos F, Pécot T, Caserta E, Huang K, Rittscher J, Leone G, Machiraju R. Singh S, et al. Among authors: machiraju r. Med Image Comput Comput Assist Interv. 2011;14(Pt 2):343-51. doi: 10.1007/978-3-642-23629-7_42. Med Image Comput Comput Assist Interv. 2011. PMID: 21995047 Free PMC article.

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