Densmore D - Search Results

1

Merlin: Computer-Aided Oligonucleotide Design for Large Scale Genome Engineering with MAGE.

Quintin M, Ma NJ, Ahmed S, Bhatia S, Lewis A, Isaacs FJ, Densmore D. Quintin M, et al. Among authors: densmore d. ACS Synth Biol. 2016 Jun 17;5(6):452-8. doi: 10.1021/acssynbio.5b00219. Epub 2016 May 11. ACS Synth Biol. 2016. PMID: 27054880

2

Developer's and user's guide to Clotho v2.0 A software platform for the creation of synthetic biological systems.

Xia B, Bhatia S, Bubenheim B, Dadgar M, Densmore D, Anderson JC. Xia B, et al. Among authors: densmore d. Methods Enzymol. 2011;498:97-135. doi: 10.1016/B978-0-12-385120-8.00005-X. Methods Enzymol. 2011. PMID: 21601675

3

An end-to-end workflow for engineering of biological networks from high-level specifications.

Beal J, Weiss R, Densmore D, Adler A, Appleton E, Babb J, Bhatia S, Davidsohn N, Haddock T, Loyall J, Schantz R, Vasilev V, Yaman F. Beal J, et al. Among authors: densmore d. ACS Synth Biol. 2012 Aug 17;1(8):317-31. doi: 10.1021/sb300030d. Epub 2012 Jul 17. ACS Synth Biol. 2012. PMID: 23651286

4

Automated selection of synthetic biology parts for genetic regulatory networks.

Yaman F, Bhatia S, Adler A, Densmore D, Beal J. Yaman F, et al. Among authors: densmore d. ACS Synth Biol. 2012 Aug 17;1(8):332-44. doi: 10.1021/sb300032y. Epub 2012 Jul 25. ACS Synth Biol. 2012. PMID: 23651287

5

Pigeon: a design visualizer for synthetic biology.

Bhatia S, Densmore D. Bhatia S, et al. Among authors: densmore d. ACS Synth Biol. 2013 Jun 21;2(6):348-50. doi: 10.1021/sb400024s. Epub 2013 Apr 25. ACS Synth Biol. 2013. PMID: 23654259

6

Bio-design automation: software + biology + robots.

Densmore DM, Bhatia S. Densmore DM, et al. Trends Biotechnol. 2014 Mar;32(3):111-3. doi: 10.1016/j.tibtech.2013.10.005. Epub 2013 Nov 21. Trends Biotechnol. 2014. PMID: 24269087 No abstract available.

7

Model-driven engineering of gene expression from RNA replicons.

Beal J, Wagner TE, Kitada T, Azizgolshani O, Parker JM, Densmore D, Weiss R. Beal J, et al. Among authors: densmore d. ACS Synth Biol. 2015 Jan 16;4(1):48-56. doi: 10.1021/sb500173f. Epub 2014 Jun 6. ACS Synth Biol. 2015. PMID: 24877739

8

Functional optimization of gene clusters by combinatorial design and assembly.

Smanski MJ, Bhatia S, Zhao D, Park Y, B A Woodruff L, Giannoukos G, Ciulla D, Busby M, Calderon J, Nicol R, Gordon DB, Densmore D, Voigt CA. Smanski MJ, et al. Among authors: densmore d. Nat Biotechnol. 2014 Dec;32(12):1241-9. doi: 10.1038/nbt.3063. Epub 2014 Nov 24. Nat Biotechnol. 2014. PMID: 25419741

9

Web-based software tool for constraint-based design specification of synthetic biological systems.

Oberortner E, Densmore D. Oberortner E, et al. Among authors: densmore d. ACS Synth Biol. 2015 Jun 19;4(6):757-60. doi: 10.1021/sb500352b. Epub 2014 Dec 16. ACS Synth Biol. 2015. PMID: 25426642

10

Owl: electronic datasheet generator.

Appleton E, Tao J, Wheatley FC, Desai DH, Lozanoski TM, Shah PD, Awtry JA, Jin SS, Haddock TL, Densmore DM. Appleton E, et al. Among authors: densmore dm. ACS Synth Biol. 2014 Dec 19;3(12):966-8. doi: 10.1021/sb500053j. ACS Synth Biol. 2014. PMID: 25524100

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