Davis JI - Search Results

1

A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales.

McKain MR, Tang H, McNeal JR, Ayyampalayam S, Davis JI, dePamphilis CW, Givnish TJ, Pires JC, Stevenson DW, Leebens-Mack JH. McKain MR, et al. Among authors: davis ji. Genome Biol Evol. 2016 Apr 21;8(4):1150-64. doi: 10.1093/gbe/evw060. Genome Biol Evol. 2016. PMID: 26988252 Free PMC article.

2

Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atp A sequences.

Davis JI, Simmons MP, Stevenson DW, Wendel JF. Davis JI, et al. Syst Biol. 1998 Jun;47(2):282-310. doi: 10.1080/106351598260923. Syst Biol. 1998. PMID: 12064229

3

Are substitution rates and RNA editing correlated?

Cuenca A, Petersen G, Seberg O, Davis JI, Stevenson DW. Cuenca A, et al. Among authors: davis ji. BMC Evol Biol. 2010 Nov 11;10:349. doi: 10.1186/1471-2148-10-349. BMC Evol Biol. 2010. PMID: 21070620 Free PMC article.

4

Phylogenetic relationships among Poaceae and related families as inferred from morphology, inversions in the plastid genome, and sequence data from the mitochondrial and plastid genomes.

Michelangeli FA, Davis JI, Stevenson DW. Michelangeli FA, et al. Among authors: davis ji. Am J Bot. 2003 Jan;90(1):93-106. doi: 10.3732/ajb.90.1.93. Am J Bot. 2003. PMID: 21659084 Free article.

5

Phylogeny of the Asparagales based on three plastid and two mitochondrial genes.

Seberg O, Petersen G, Davis JI, Pires JC, Stevenson DW, Chase MW, Fay MF, Devey DS, Jørgensen T, Sytsma KJ, Pillon Y. Seberg O, et al. Among authors: davis ji. Am J Bot. 2012 May;99(5):875-89. doi: 10.3732/ajb.1100468. Epub 2012 Apr 26. Am J Bot. 2012. PMID: 22539521 Free article.

6

Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)?

Barrett CF, Specht CD, Leebens-Mack J, Stevenson DW, Zomlefer WB, Davis JI. Barrett CF, et al. Among authors: davis ji. Ann Bot. 2014 Jan;113(1):119-33. doi: 10.1093/aob/mct264. Epub 2013 Nov 25. Ann Bot. 2014. PMID: 24280362 Free PMC article.

7

Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes.

Saarela JM, Wysocki WP, Barrett CF, Soreng RJ, Davis JI, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield DR, Duvall MR. Saarela JM, et al. Among authors: davis ji. AoB Plants. 2015 May 4;7:plv046. doi: 10.1093/aobpla/plv046. AoB Plants. 2015. PMID: 25940204 Free PMC article.

8

Resolving relationships within the palm subfamily Arecoideae (Arecaceae) using plastid sequences derived from next-generation sequencing.

Comer JR, Zomlefer WB, Barrett CF, Davis JI, Stevenson DW, Heyduk K, Leebens-Mack JH. Comer JR, et al. Among authors: davis ji. Am J Bot. 2015 Jun;102(6):888-99. doi: 10.3732/ajb.1500057. Epub 2015 May 29. Am J Bot. 2015. PMID: 26101415 Free article.

9

Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots.

Barrett CF, Baker WJ, Comer JR, Conran JG, Lahmeyer SC, Leebens-Mack JH, Li J, Lim GS, Mayfield-Jones DR, Perez L, Medina J, Pires JC, Santos C, Wm Stevenson D, Zomlefer WB, Davis JI. Barrett CF, et al. Among authors: davis ji. New Phytol. 2016 Jan;209(2):855-70. doi: 10.1111/nph.13617. Epub 2015 Sep 9. New Phytol. 2016. PMID: 26350789 Free article.

10

Localized Retroprocessing as a Model of Intron Loss in the Plant Mitochondrial Genome.

Cuenca A, Ross TG, Graham SW, Barrett CF, Davis JI, Seberg O, Petersen G. Cuenca A, et al. Among authors: davis ji. Genome Biol Evol. 2016 Aug 3;8(7):2176-89. doi: 10.1093/gbe/evw148. Genome Biol Evol. 2016. PMID: 27435795 Free PMC article.

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