Sherman B - Search Results

1

Towards Better Precision Medicine: PacBio Single-Molecule Long Reads Resolve the Interpretation of HIV Drug Resistant Mutation Profiles at Explicit Quasispecies (Haplotype) Level.

Huang DW, Raley C, Jiang MK, Zheng X, Liang D, Rehman MT, Highbarger HC, Jiao X, Sherman B, Ma L, Chen X, Skelly T, Troyer J, Stephens R, Imamichi T, Pau A, Lempicki RA, Tran B, Nissley D, Lane HC, Dewar RL. Huang DW, et al. Among authors: sherman b. J Data Mining Genomics Proteomics. 2016 Jan;7(1):182. doi: 10.4172/2153-0602.1000182. Epub 2015 Nov 8. J Data Mining Genomics Proteomics. 2016. PMID: 26949565 Free PMC article.

2

DAVID: Database for Annotation, Visualization, and Integrated Discovery.

Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA. Dennis G Jr, et al. Genome Biol. 2003;4(5):P3. Epub 2003 Apr 3. Genome Biol. 2003. PMID: 12734009

3

Identifying biological themes within lists of genes with EASE.

Hosack DA, Dennis G Jr, Sherman BT, Lane HC, Lempicki RA. Hosack DA, et al. Genome Biol. 2003;4(10):R70. doi: 10.1186/gb-2003-4-10-r70. Epub 2003 Sep 11. Genome Biol. 2003. PMID: 14519205 Free PMC article.

4

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Huang DW, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA. Huang DW, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. doi: 10.1093/nar/gkm415. Epub 2007 Jun 18. Nucleic Acids Res. 2007. PMID: 17576678 Free PMC article.

5

The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists.

Huang DW, Sherman BT, Tan Q, Collins JR, Alvord WG, Roayaei J, Stephens R, Baseler MW, Lane HC, Lempicki RA. Huang DW, et al. Genome Biol. 2007;8(9):R183. doi: 10.1186/gb-2007-8-9-r183. Genome Biol. 2007. PMID: 17784955 Free PMC article.

6

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA. Sherman BT, et al. BMC Bioinformatics. 2007 Nov 2;8:426. doi: 10.1186/1471-2105-8-426. BMC Bioinformatics. 2007. PMID: 17980028 Free PMC article.

7

DAVID gene ID conversion tool.

Huang da W, Sherman BT, Stephens R, Baseler MW, Lane HC, Lempicki RA. Huang da W, et al. Bioinformation. 2008 Jul 30;2(10):428-30. doi: 10.6026/97320630002428. Bioinformation. 2008. PMID: 18841237 Free PMC article.

8

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.

Huang da W, Sherman BT, Lempicki RA. Huang da W, et al. Nucleic Acids Res. 2009 Jan;37(1):1-13. doi: 10.1093/nar/gkn923. Epub 2008 Nov 25. Nucleic Acids Res. 2009. PMID: 19033363 Free PMC article.

9

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

Huang da W, Sherman BT, Lempicki RA. Huang da W, et al. Nat Protoc. 2009;4(1):44-57. doi: 10.1038/nprot.2008.211. Nat Protoc. 2009. PMID: 19131956

10

Extracting biological meaning from large gene lists with DAVID.

Huang da W, Sherman BT, Zheng X, Yang J, Imamichi T, Stephens R, Lempicki RA. Huang da W, et al. Curr Protoc Bioinformatics. 2009 Sep;Chapter 13:Unit 13.11. doi: 10.1002/0471250953.bi1311s27. Curr Protoc Bioinformatics. 2009. PMID: 19728287

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