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The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.
Belda E, van Heck RG, José Lopez-Sanchez M, Cruveiller S, Barbe V, Fraser C, Klenk HP, Petersen J, Morgat A, Nikel PI, Vallenet D, Rouy Z, Sekowska A, Martins Dos Santos VA, de Lorenzo V, Danchin A, Médigue C. Belda E, et al. Environ Microbiol. 2016 Oct;18(10):3403-3424. doi: 10.1111/1462-2920.13230. Epub 2016 Apr 28. Environ Microbiol. 2016. PMID: 26913973
An updated metabolic view of the Bacillus subtilis 168 genome.
Belda E, Sekowska A, Le Fèvre F, Morgat A, Mornico D, Ouzounis C, Vallenet D, Médigue C, Danchin A. Belda E, et al. Microbiology (Reading). 2013 Apr;159(Pt 4):757-770. doi: 10.1099/mic.0.064691-0. Epub 2013 Feb 21. Microbiology (Reading). 2013. PMID: 23429746 Free article.
MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.
Vallenet D, Belda E, Calteau A, Cruveiller S, Engelen S, Lajus A, Le Fèvre F, Longin C, Mornico D, Roche D, Rouy Z, Salvignol G, Scarpelli C, Thil Smith AA, Weiman M, Médigue C. Vallenet D, et al. Among authors: belda e. Nucleic Acids Res. 2013 Jan;41(Database issue):D636-47. doi: 10.1093/nar/gks1194. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193269 Free PMC article.
Updates in Rhea--a manually curated resource of biochemical reactions.
Morgat A, Axelsen KB, Lombardot T, Alcántara R, Aimo L, Zerara M, Niknejad A, Belda E, Hyka-Nouspikel N, Coudert E, Redaschi N, Bougueleret L, Steinbeck C, Xenarios I, Bridge A. Morgat A, et al. Among authors: belda e. Nucleic Acids Res. 2015 Jan;43(Database issue):D459-64. doi: 10.1093/nar/gku961. Epub 2014 Oct 20. Nucleic Acids Res. 2015. PMID: 25332395 Free PMC article.
Interpretable and accurate prediction models for metagenomics data.
Prifti E, Chevaleyre Y, Hanczar B, Belda E, Danchin A, Clément K, Zucker JD. Prifti E, et al. Among authors: belda e. Gigascience. 2020 Mar 1;9(3):giaa010. doi: 10.1093/gigascience/giaa010. Gigascience. 2020. PMID: 32150601 Free PMC article.
Rhea--a manually curated resource of biochemical reactions.
Alcántara R, Axelsen KB, Morgat A, Belda E, Coudert E, Bridge A, Cao H, de Matos P, Ennis M, Turner S, Owen G, Bougueleret L, Xenarios I, Steinbeck C. Alcántara R, et al. Among authors: belda e. Nucleic Acids Res. 2012 Jan;40(Database issue):D754-60. doi: 10.1093/nar/gkr1126. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22135291 Free PMC article.
Major microbiota dysbiosis in severe obesity: fate after bariatric surgery.
Aron-Wisnewsky J, Prifti E, Belda E, Ichou F, Kayser BD, Dao MC, Verger EO, Hedjazi L, Bouillot JL, Chevallier JM, Pons N, Le Chatelier E, Levenez F, Ehrlich SD, Dore J, Zucker JD, Clément K. Aron-Wisnewsky J, et al. Among authors: belda e. Gut. 2019 Jan;68(1):70-82. doi: 10.1136/gutjnl-2018-316103. Epub 2018 Jun 13. Gut. 2019. PMID: 29899081 Free PMC article.
115 results