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A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage.
Faure E, Savy T, Rizzi B, Melani C, Stašová O, Fabrèges D, Špir R, Hammons M, Čúnderlík R, Recher G, Lombardot B, Duloquin L, Colin I, Kollár J, Desnoulez S, Affaticati P, Maury B, Boyreau A, Nief JY, Calvat P, Vernier P, Frain M, Lutfalla G, Kergosien Y, Suret P, Remešíková M, Doursat R, Sarti A, Mikula K, Peyriéras N, Bourgine P. Faure E, et al. Among authors: sarti a. Nat Commun. 2016 Feb 25;7:8674. doi: 10.1038/ncomms9674. Nat Commun. 2016. PMID: 26912388 Free PMC article.
Segmentation of cells from 3-D confocal images of live zebrafish embryo.
Zanella C, Rizzi B, Melani C, Campana M, Bourgine P, Mikula K, Peyriéras N, Sarti A. Zanella C, et al. Among authors: sarti a. Annu Int Conf IEEE Eng Med Biol Soc. 2007;2007:6028-31. doi: 10.1109/IEMBS.2007.4353722. Annu Int Conf IEEE Eng Med Biol Soc. 2007. PMID: 18003388
Cells segmentation from 3-D confocal images of early zebrafish embryogenesis.
Zanella C, Campana M, Rizzi B, Melani C, Sanguinetti G, Bourgine P, Mikula K, Peyrieras N, Sarti A. Zanella C, et al. Among authors: sarti a. IEEE Trans Image Process. 2010 Mar;19(3):770-81. doi: 10.1109/TIP.2009.2033629. Epub 2009 Oct 6. IEEE Trans Image Process. 2010. PMID: 19955038
Cells tracking in a live zebrafish embryo.
Melani C, Campana M, Lombardot B, Rizzi B, Veronesi F, Zanella C, Bourgine P, Mikula K, Peyriéras N, Sarti A. Melani C, et al. Among authors: sarti a. Annu Int Conf IEEE Eng Med Biol Soc. 2007;2007:1631-4. doi: 10.1109/IEMBS.2007.4352619. Annu Int Conf IEEE Eng Med Biol Soc. 2007. PMID: 18002285
3-D zebrafish embryo image filtering by nonlinear partial differential equations.
Rizzi B, Campana M, Zanella C, Melani C, Cunderlik R, Krivá Z, Bourgine P, Mikula K, Peyriéras N, Sarti A. Rizzi B, et al. Among authors: sarti a. Annu Int Conf IEEE Eng Med Biol Soc. 2007;2007:6252-5. doi: 10.1109/IEMBS.2007.4353784. Annu Int Conf IEEE Eng Med Biol Soc. 2007. PMID: 18003450
520 results