Allouche D - Search Results

1

Fast search algorithms for computational protein design.

Traoré S, Roberts KE, Allouche D, Donald BR, André I, Schiex T, Barbe S. Traoré S, et al. Among authors: allouche d. J Comput Chem. 2016 May 5;37(12):1048-58. doi: 10.1002/jcc.24290. Epub 2016 Feb 2. J Comput Chem. 2016. PMID: 26833706 Free PMC article.

2

A new framework for computational protein design through cost function network optimization.

Traoré S, Allouche D, André I, de Givry S, Katsirelos G, Schiex T, Barbe S. Traoré S, et al. Among authors: allouche d. Bioinformatics. 2013 Sep 1;29(17):2129-36. doi: 10.1093/bioinformatics/btt374. Epub 2013 Jul 10. Bioinformatics. 2013. PMID: 23842814

3

Guaranteed Discrete Energy Optimization on Large Protein Design Problems.

Simoncini D, Allouche D, de Givry S, Delmas C, Barbe S, Schiex T. Simoncini D, et al. Among authors: allouche d. J Chem Theory Comput. 2015 Dec 8;11(12):5980-9. doi: 10.1021/acs.jctc.5b00594. Epub 2015 Nov 25. J Chem Theory Comput. 2015. PMID: 26610100

4

Deterministic Search Methods for Computational Protein Design.

Traoré S, Allouche D, André I, Schiex T, Barbe S. Traoré S, et al. Among authors: allouche d. Methods Mol Biol. 2017;1529:107-123. doi: 10.1007/978-1-4939-6637-0_4. Methods Mol Biol. 2017. PMID: 27914047

5

Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems.

Charpentier A, Mignon D, Barbe S, Cortes J, Schiex T, Simonson T, Allouche D. Charpentier A, et al. Among authors: allouche d. J Chem Inf Model. 2019 Jan 28;59(1):127-136. doi: 10.1021/acs.jcim.8b00510. Epub 2018 Nov 14. J Chem Inf Model. 2019. PMID: 30380857

6

Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis.

Vignes M, Vandel J, Allouche D, Ramadan-Alban N, Cierco-Ayrolles C, Schiex T, Mangin B, de Givry S. Vignes M, et al. Among authors: allouche d. PLoS One. 2011;6(12):e29165. doi: 10.1371/journal.pone.0029165. Epub 2011 Dec 27. PLoS One. 2011. PMID: 22216195 Free PMC article.

7

BioMAJ: a flexible framework for databanks synchronization and processing.

Filangi O, Beausse Y, Assi A, Legrand L, Larré JM, Martin V, Collin O, Caron C, Leroy H, Allouche D. Filangi O, et al. Among authors: allouche d. Bioinformatics. 2008 Aug 15;24(16):1823-5. doi: 10.1093/bioinformatics/btn325. Epub 2008 Jun 30. Bioinformatics. 2008. PMID: 18593718 Free PMC article.

8

Ca2+/Mg2+ exchange in parvalbumin and other EF-hand proteins. A theoretical study.

Allouche D, Parello J, Sanejouand YH. Allouche D, et al. J Mol Biol. 1999 Jan 15;285(2):857-73. doi: 10.1006/jmbi.1998.2329. J Mol Biol. 1999. PMID: 9878449

9

Characterization of poly(A) and poly(T) tail lengths in plasmid DNA by liquid chromatography high-resolution mass spectrometry.

Al Turihi N, Allouche D, Quéré M, Scuiller M, Legastelois I. Al Turihi N, et al. Among authors: allouche d. Anal Bioanal Chem. 2024 Nov 16. doi: 10.1007/s00216-024-05654-6. Online ahead of print. Anal Bioanal Chem. 2024. PMID: 39547978

10

RNA Secondary Structure Modeling Following the IPANEMAP Workflow.

Allouche D, De Bisschop G, Saaidi A, Hardouin P, du Moutier FL, Ponty Y, Bruno S. Allouche D, et al. Methods Mol Biol. 2024;2726:85-104. doi: 10.1007/978-1-0716-3519-3_4. Methods Mol Biol. 2024. PMID: 38780728

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