Yakunin AF - Search Results

1

Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli.

Kumar A, Beloglazova N, Bundalovic-Torma C, Phanse S, Deineko V, Gagarinova A, Musso G, Vlasblom J, Lemak S, Hooshyar M, Minic Z, Wagih O, Mosca R, Aloy P, Golshani A, Parkinson J, Emili A, Yakunin AF, Babu M. Kumar A, et al. Among authors: yakunin af. Cell Rep. 2016 Jan 26;14(3):648-661. doi: 10.1016/j.celrep.2015.12.060. Epub 2016 Jan 8. Cell Rep. 2016. PMID: 26774489 Free article.

2

Ni(II)-binding affinity of CcNikZ-II and its homologs: the role of the HH-prong and variable loop revealed by structural and mutational studies.

Diep P, Stogios PJ, Evdokimova E, Savchenko A, Mahadevan R, Yakunin AF. Diep P, et al. Among authors: yakunin af. FEBS J. 2024 Jul;291(13):2980-2993. doi: 10.1111/febs.17125. Epub 2024 Mar 31. FEBS J. 2024. PMID: 38555564

3

A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair.

Babu M, Beloglazova N, Flick R, Graham C, Skarina T, Nocek B, Gagarinova A, Pogoutse O, Brown G, Binkowski A, Phanse S, Joachimiak A, Koonin EV, Savchenko A, Emili A, Greenblatt J, Edwards AM, Yakunin AF. Babu M, et al. Among authors: yakunin af. Mol Microbiol. 2011 Jan;79(2):484-502. doi: 10.1111/j.1365-2958.2010.07465.x. Epub 2010 Dec 7. Mol Microbiol. 2011. PMID: 21219465 Free PMC article.

4

Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference.

Beloglazova N, Petit P, Flick R, Brown G, Savchenko A, Yakunin AF. Beloglazova N, et al. Among authors: yakunin af. EMBO J. 2011 Oct 18;30(22):4616-27. doi: 10.1038/emboj.2011.377. EMBO J. 2011. PMID: 22009198 Free PMC article.

5

Nuclease activity of the human SAMHD1 protein implicated in the Aicardi-Goutieres syndrome and HIV-1 restriction.

Beloglazova N, Flick R, Tchigvintsev A, Brown G, Popovic A, Nocek B, Yakunin AF. Beloglazova N, et al. Among authors: yakunin af. J Biol Chem. 2013 Mar 22;288(12):8101-8110. doi: 10.1074/jbc.M112.431148. Epub 2013 Jan 30. J Biol Chem. 2013. PMID: 23364794 Free PMC article.

6

Toroidal structure and DNA cleavage by the CRISPR-associated [4Fe-4S] cluster containing Cas4 nuclease SSO0001 from Sulfolobus solfataricus.

Lemak S, Beloglazova N, Nocek B, Skarina T, Flick R, Brown G, Popovic A, Joachimiak A, Savchenko A, Yakunin AF. Lemak S, et al. Among authors: yakunin af. J Am Chem Soc. 2013 Nov 20;135(46):17476-87. doi: 10.1021/ja408729b. Epub 2013 Nov 11. J Am Chem Soc. 2013. PMID: 24171432 Free PMC article.

7

Biochemical and structural studies of conserved Maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides.

Tchigvintsev A, Tchigvintsev D, Flick R, Popovic A, Dong A, Xu X, Brown G, Lu W, Wu H, Cui H, Dombrowski L, Joo JC, Beloglazova N, Min J, Savchenko A, Caudy AA, Rabinowitz JD, Murzin AG, Yakunin AF. Tchigvintsev A, et al. Among authors: yakunin af. Chem Biol. 2013 Nov 21;20(11):1386-98. doi: 10.1016/j.chembiol.2013.09.011. Epub 2013 Oct 24. Chem Biol. 2013. PMID: 24210219 Free PMC article.

8

The CRISPR-associated Cas4 protein Pcal_0546 from Pyrobaculum calidifontis contains a [2Fe-2S] cluster: crystal structure and nuclease activity.

Lemak S, Nocek B, Beloglazova N, Skarina T, Flick R, Brown G, Joachimiak A, Savchenko A, Yakunin AF. Lemak S, et al. Among authors: yakunin af. Nucleic Acids Res. 2014;42(17):11144-55. doi: 10.1093/nar/gku797. Epub 2014 Sep 8. Nucleic Acids Res. 2014. PMID: 25200083 Free PMC article.

9

Role of the Streptococcus mutans CRISPR-Cas systems in immunity and cell physiology.

Serbanescu MA, Cordova M, Krastel K, Flick R, Beloglazova N, Latos A, Yakunin AF, Senadheera DB, Cvitkovitch DG. Serbanescu MA, et al. Among authors: yakunin af. J Bacteriol. 2015 Feb 15;197(4):749-61. doi: 10.1128/JB.02333-14. Epub 2014 Dec 8. J Bacteriol. 2015. PMID: 25488301 Free PMC article.

10

CRISPR RNA binding and DNA target recognition by purified Cascade complexes from Escherichia coli.

Beloglazova N, Kuznedelov K, Flick R, Datsenko KA, Brown G, Popovic A, Lemak S, Semenova E, Severinov K, Yakunin AF. Beloglazova N, et al. Among authors: yakunin af. Nucleic Acids Res. 2015 Jan;43(1):530-43. doi: 10.1093/nar/gku1285. Epub 2014 Dec 8. Nucleic Acids Res. 2015. PMID: 25488810 Free PMC article.

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