Price ND - Search Results

1

Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis.

Ma S, Minch KJ, Rustad TR, Hobbs S, Zhou SL, Sherman DR, Price ND. Ma S, et al. Among authors: price nd. PLoS Comput Biol. 2015 Nov 30;11(11):e1004543. doi: 10.1371/journal.pcbi.1004543. eCollection 2015 Nov. PLoS Comput Biol. 2015. PMID: 26618656 Free PMC article.

2

Matrix formalism to describe functional states of transcriptional regulatory systems.

Gianchandani EP, Papin JA, Price ND, Joyce AR, Palsson BO. Gianchandani EP, et al. Among authors: price nd. PLoS Comput Biol. 2006 Aug 11;2(8):e101. doi: 10.1371/journal.pcbi.0020101. PLoS Comput Biol. 2006. PMID: 16895435 Free PMC article.

3

Identifying tightly regulated and variably expressed networks by Differential Rank Conservation (DIRAC).

Eddy JA, Hood L, Price ND, Geman D. Eddy JA, et al. Among authors: price nd. PLoS Comput Biol. 2010 May 27;6(5):e1000792. doi: 10.1371/journal.pcbi.1000792. PLoS Comput Biol. 2010. PMID: 20523739 Free PMC article.

4

Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis.

Chandrasekaran S, Price ND. Chandrasekaran S, et al. Among authors: price nd. Proc Natl Acad Sci U S A. 2010 Oct 12;107(41):17845-50. doi: 10.1073/pnas.1005139107. Epub 2010 Sep 27. Proc Natl Acad Sci U S A. 2010. PMID: 20876091 Free PMC article.

5

Systems approaches to molecular cancer diagnostics.

Ma S, Funk CC, Price ND. Ma S, et al. Among authors: price nd. Discov Med. 2010 Dec;10(55):531-42. Discov Med. 2010. PMID: 21189224 Free PMC article. Review.

6

Label-free proteomics and systems biology analysis of mycobacterial phagosomes in dendritic cells and macrophages.

Li Q, Singh CR, Ma S, Price ND, Jagannath C. Li Q, et al. Among authors: price nd. J Proteome Res. 2011 May 6;10(5):2425-39. doi: 10.1021/pr101245u. Epub 2011 Mar 30. J Proteome Res. 2011. PMID: 21413810 Free PMC article.

7

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.

Milne CB, Eddy JA, Raju R, Ardekani S, Kim PJ, Senger RS, Jin YS, Blaschek HP, Price ND. Milne CB, et al. Among authors: price nd. BMC Syst Biol. 2011 Aug 16;5:130. doi: 10.1186/1752-0509-5-130. BMC Syst Biol. 2011. PMID: 21846360 Free PMC article.

8

Genome-scale metabolic reconstruction and hypothesis testing in the methanogenic archaeon Methanosarcina acetivorans C2A.

Benedict MN, Gonnerman MC, Metcalf WW, Price ND. Benedict MN, et al. Among authors: price nd. J Bacteriol. 2012 Feb;194(4):855-65. doi: 10.1128/JB.06040-11. Epub 2011 Dec 2. J Bacteriol. 2012. PMID: 22139506 Free PMC article.

9

Genetic co-occurrence network across sequenced microbes.

Kim PJ, Price ND. Kim PJ, et al. Among authors: price nd. PLoS Comput Biol. 2011 Dec;7(12):e1002340. doi: 10.1371/journal.pcbi.1002340. Epub 2011 Dec 29. PLoS Comput Biol. 2011. PMID: 22219725 Free PMC article.

10

A guide to integrating transcriptional regulatory and metabolic networks using PROM (probabilistic regulation of metabolism).

Simeonidis E, Chandrasekaran S, Price ND. Simeonidis E, et al. Among authors: price nd. Methods Mol Biol. 2013;985:103-12. doi: 10.1007/978-1-62703-299-5_6. Methods Mol Biol. 2013. PMID: 23417801 Free article.

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