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Page 1
A Fijivirus Major Viroplasm Protein Shows RNA-Stimulated ATPase Activity by Adopting Pentameric and Hexameric Assemblies of Dimers.
Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Mikkelsen E, Tijman A, Arranz R, Alfonso V, Arellano SM, Goldbaum FA, Sterckx YGJ, Carazo JM, Kaufman SB, Dans PD, Del Vas M, Otero LH. Llauger G, et al. Among authors: dans pd. mBio. 2023 Apr 25;14(2):e0002323. doi: 10.1128/mbio.00023-23. Epub 2023 Feb 14. mBio. 2023. PMID: 36786587 Free PMC article.
Exploring polymorphisms in B-DNA helical conformations.
Dans PD, Pérez A, Faustino I, Lavery R, Orozco M. Dans PD, et al. Nucleic Acids Res. 2012 Nov;40(21):10668-78. doi: 10.1093/nar/gks884. Epub 2012 Sep 24. Nucleic Acids Res. 2012. PMID: 23012264 Free PMC article.
Direct measurement of the dielectric polarization properties of DNA.
Cuervo A, Dans PD, Carrascosa JL, Orozco M, Gomila G, Fumagalli L. Cuervo A, et al. Among authors: dans pd. Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):E3624-30. doi: 10.1073/pnas.1405702111. Epub 2014 Aug 18. Proc Natl Acad Sci U S A. 2014. PMID: 25136104 Free PMC article.
μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA.
Pasi M, Maddocks JH, Beveridge D, Bishop TC, Case DA, Cheatham T 3rd, Dans PD, Jayaram B, Lankas F, Laughton C, Mitchell J, Osman R, Orozco M, Pérez A, Petkevičiūtė D, Spackova N, Sponer J, Zakrzewska K, Lavery R. Pasi M, et al. Among authors: dans pd. Nucleic Acids Res. 2014 Oct 29;42(19):12272-83. doi: 10.1093/nar/gku855. Epub 2014 Sep 26. Nucleic Acids Res. 2014. PMID: 25260586 Free PMC article.
The structural impact of DNA mismatches.
Rossetti G, Dans PD, Gomez-Pinto I, Ivani I, Gonzalez C, Orozco M. Rossetti G, et al. Among authors: dans pd. Nucleic Acids Res. 2015 Apr 30;43(8):4309-21. doi: 10.1093/nar/gkv254. Epub 2015 Mar 27. Nucleic Acids Res. 2015. PMID: 25820425 Free PMC article.
Parmbsc1: a refined force field for DNA simulations.
Ivani I, Dans PD, Noy A, Pérez A, Faustino I, Hospital A, Walther J, Andrio P, Goñi R, Balaceanu A, Portella G, Battistini F, Gelpí JL, González C, Vendruscolo M, Laughton CA, Harris SA, Case DA, Orozco M. Ivani I, et al. Among authors: dans pd. Nat Methods. 2016 Jan;13(1):55-8. doi: 10.1038/nmeth.3658. Epub 2015 Nov 16. Nat Methods. 2016. PMID: 26569599 Free PMC article.
Multiscale simulation of DNA.
Dans PD, Walther J, Gómez H, Orozco M. Dans PD, et al. Curr Opin Struct Biol. 2016 Apr;37:29-45. doi: 10.1016/j.sbi.2015.11.011. Epub 2015 Dec 19. Curr Opin Struct Biol. 2016. PMID: 26708341 Free article. Review.
Long-timescale dynamics of the Drew-Dickerson dodecamer.
Dans PD, Danilāne L, Ivani I, Dršata T, Lankaš F, Hospital A, Walther J, Pujagut RI, Battistini F, Gelpí JL, Lavery R, Orozco M. Dans PD, et al. Nucleic Acids Res. 2016 May 19;44(9):4052-66. doi: 10.1093/nar/gkw264. Epub 2016 Apr 15. Nucleic Acids Res. 2016. PMID: 27084952 Free PMC article.
46 results