Müller C - Search Results

1

Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditions.

Plessis A, Hafemeister C, Wilkins O, Gonzaga ZJ, Meyer RS, Pires I, Müller C, Septiningsih EM, Bonneau R, Purugganan M. Plessis A, et al. Among authors: muller c. Elife. 2015 Nov 26;4:e08411. doi: 10.7554/eLife.08411. Elife. 2015. PMID: 26609814 Free PMC article.

2

Fused Regression for Multi-source Gene Regulatory Network Inference.

Lam KY, Westrick ZM, Müller CL, Christiaen L, Bonneau R. Lam KY, et al. PLoS Comput Biol. 2016 Dec 6;12(12):e1005157. doi: 10.1371/journal.pcbi.1005157. eCollection 2016 Dec. PLoS Comput Biol. 2016. PMID: 27923054 Free PMC article.

3

Identifying direct contacts between protein complex subunits from their conditional dependence in proteomics datasets.

Drew K, Müller CL, Bonneau R, Marcotte EM. Drew K, et al. PLoS Comput Biol. 2017 Oct 12;13(10):e1005625. doi: 10.1371/journal.pcbi.1005625. eCollection 2017 Oct. PLoS Comput Biol. 2017. PMID: 29023445 Free PMC article.

4

Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing.

Äijö T, Müller CL, Bonneau R. Äijö T, et al. Bioinformatics. 2018 Feb 1;34(3):372-380. doi: 10.1093/bioinformatics/btx549. Bioinformatics. 2018. PMID: 28968799 Free PMC article.

5

Shrinkage improves estimation of microbial associations under different normalization methods.

Badri M, Kurtz ZD, Bonneau R, Müller CL. Badri M, et al. NAR Genom Bioinform. 2020 Dec 17;2(4):lqaa100. doi: 10.1093/nargab/lqaa100. eCollection 2020 Dec. NAR Genom Bioinform. 2020. PMID: 33575644 Free PMC article.

6

Sparse and compositionally robust inference of microbial ecological networks.

Kurtz ZD, Müller CL, Miraldi ER, Littman DR, Blaser MJ, Bonneau RA. Kurtz ZD, et al. PLoS Comput Biol. 2015 May 7;11(5):e1004226. doi: 10.1371/journal.pcbi.1004226. eCollection 2015 May. PLoS Comput Biol. 2015. PMID: 25950956 Free PMC article.

7

Robust classification of protein variation using structural modelling and large-scale data integration.

Baugh EH, Simmons-Edler R, Müller CL, Alford RF, Volfovsky N, Lash AE, Bonneau R. Baugh EH, et al. Nucleic Acids Res. 2016 Apr 7;44(6):2501-13. doi: 10.1093/nar/gkw120. Epub 2016 Feb 28. Nucleic Acids Res. 2016. PMID: 26926108 Free PMC article.

8

A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity.

Ruiz VE, Battaglia T, Kurtz ZD, Bijnens L, Ou A, Engstrand I, Zheng X, Iizumi T, Mullins BJ, Müller CL, Cadwell K, Bonneau R, Perez-Perez GI, Blaser MJ. Ruiz VE, et al. Nat Commun. 2017 Sep 11;8(1):518. doi: 10.1038/s41467-017-00531-6. Nat Commun. 2017. PMID: 28894149 Free PMC article.

9

4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments.

Raviram R, Rocha PP, Müller CL, Miraldi ER, Badri S, Fu Y, Swanzey E, Proudhon C, Snetkova V, Bonneau R, Skok JA. Raviram R, et al. Among authors: muller cl. PLoS Comput Biol. 2016 Mar 3;12(3):e1004780. doi: 10.1371/journal.pcbi.1004780. eCollection 2016 Mar. PLoS Comput Biol. 2016. PMID: 26938081 Free PMC article.

10

Fungi stabilize connectivity in the lung and skin microbial ecosystems.

Tipton L, Müller CL, Kurtz ZD, Huang L, Kleerup E, Morris A, Bonneau R, Ghedin E. Tipton L, et al. Microbiome. 2018 Jan 15;6(1):12. doi: 10.1186/s40168-017-0393-0. Microbiome. 2018. PMID: 29335027 Free PMC article.

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