de Pretis S - Search Results

1

Transcription of Mammalian cis-Regulatory Elements Is Restrained by Actively Enforced Early Termination.

Austenaa LM, Barozzi I, Simonatto M, Masella S, Della Chiara G, Ghisletti S, Curina A, de Wit E, Bouwman BA, de Pretis S, Piccolo V, Termanini A, Prosperini E, Pelizzola M, de Laat W, Natoli G. Austenaa LM, et al. Among authors: de laat w, de pretis s, de wit e. Mol Cell. 2015 Nov 5;60(3):460-74. doi: 10.1016/j.molcel.2015.09.018. Epub 2015 Oct 22. Mol Cell. 2015. PMID: 26593720 Free article.

2

Dynamics of transcriptional and post-transcriptional regulation.

Furlan M, de Pretis S, Pelizzola M. Furlan M, et al. Among authors: de pretis s. Brief Bioinform. 2021 Jul 20;22(4):bbaa389. doi: 10.1093/bib/bbaa389. Brief Bioinform. 2021. PMID: 33348360 Free PMC article. Review.

3

Identification of Genes Post-Transcriptionally Regulated from RNA-seq: The Case Study of Liver Hepatocellular Carcinoma.

de Pretis S, Furlan M, Pelizzola M. de Pretis S, et al. Methods Mol Biol. 2021;2284:271-287. doi: 10.1007/978-1-0716-1307-8_15. Methods Mol Biol. 2021. PMID: 33835448

4

Computational and experimental methods to decipher the epigenetic code.

de Pretis S, Pelizzola M. de Pretis S, et al. Front Genet. 2014 Sep 23;5:335. doi: 10.3389/fgene.2014.00335. eCollection 2014. Front Genet. 2014. PMID: 25295054 Free PMC article.

5

Integrative classification of human coding and noncoding genes through RNA metabolism profiles.

Mukherjee N, Calviello L, Hirsekorn A, de Pretis S, Pelizzola M, Ohler U. Mukherjee N, et al. Among authors: de pretis s. Nat Struct Mol Biol. 2017 Jan;24(1):86-96. doi: 10.1038/nsmb.3325. Epub 2016 Nov 21. Nat Struct Mol Biol. 2017. PMID: 27870833

6

Integrative analysis of RNA polymerase II and transcriptional dynamics upon MYC activation.

de Pretis S, Kress TR, Morelli MJ, Sabò A, Locarno C, Verrecchia A, Doni M, Campaner S, Amati B, Pelizzola M. de Pretis S, et al. Genome Res. 2017 Oct;27(10):1658-1664. doi: 10.1101/gr.226035.117. Epub 2017 Sep 13. Genome Res. 2017. PMID: 28904013 Free PMC article.

7

An early Myc-dependent transcriptional program orchestrates cell growth during B-cell activation.

Tesi A, de Pretis S, Furlan M, Filipuzzi M, Morelli MJ, Andronache A, Doni M, Verrecchia A, Pelizzola M, Amati B, Sabò A. Tesi A, et al. Among authors: de pretis s. EMBO Rep. 2019 Sep;20(9):e47987. doi: 10.15252/embr.201947987. Epub 2019 Jul 23. EMBO Rep. 2019. PMID: 31334602 Free PMC article.

8

INSPEcT-GUI Reveals the Impact of the Kinetic Rates of RNA Synthesis, Processing, and Degradation, on Premature and Mature RNA Species.

de Pretis S, Furlan M, Pelizzola M. de Pretis S, et al. Front Genet. 2020 Jul 17;11:759. doi: 10.3389/fgene.2020.00759. eCollection 2020. Front Genet. 2020. PMID: 32765590 Free PMC article.

9

Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis.

Sabò A, Kress TR, Pelizzola M, de Pretis S, Gorski MM, Tesi A, Morelli MJ, Bora P, Doni M, Verrecchia A, Tonelli C, Fagà G, Bianchi V, Ronchi A, Low D, Müller H, Guccione E, Campaner S, Amati B. Sabò A, et al. Among authors: de pretis s. Nature. 2014 Jul 24;511(7510):488-492. doi: 10.1038/nature13537. Epub 2014 Jul 9. Nature. 2014. PMID: 25043028 Free PMC article.

10

INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments.

de Pretis S, Kress T, Morelli MJ, Melloni GE, Riva L, Amati B, Pelizzola M. de Pretis S, et al. Bioinformatics. 2015 Sep 1;31(17):2829-35. doi: 10.1093/bioinformatics/btv288. Epub 2015 May 7. Bioinformatics. 2015. PMID: 25957348

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