Tresch A - Search Results

1

Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model.

Glas J, Dümcke S, Zacher B, Poron D, Gagneur J, Tresch A. Glas J, et al. Among authors: tresch a. Nucleic Acids Res. 2016 Mar 18;44(5):e44. doi: 10.1093/nar/gkv1184. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26578558 Free PMC article.

2

IGF1R expression by adult oligodendrocytes is not required in the steady-state but supports neuroinflammation.

Locatelli G, Marques-Ferreira F, Katsoulas A, Kalaitzaki V, Krueger M, Ingold-Heppner B, Walthert S, Sankowski R, Prazeres da Costa O, Dolga A, Huber M, Gold M, Culmsee C, Waisman A, Bechmann I, Milchevskaya V, Prinz M, Tresch A, Becher B, Buch T. Locatelli G, et al. Among authors: tresch a. Glia. 2023 Mar;71(3):616-632. doi: 10.1002/glia.24299. Epub 2022 Nov 17. Glia. 2023. PMID: 36394300 Free article.

3

Preliminary results from the EMoLung clinical study showing early lung cancer detection by the LC score.

Rubio K, Müller JM, Mehta A, Watermann I, Olchers T, Koch I, Wessels S, Schneider MA, Araujo-Ramos T, Singh I, Kugler C, Stoleriu MG, Kriegsmann M, Eichhorn M, Muley T, Merkel OM, Braun T, Ammerpohl O, Reck M, Tresch A, Barreto G. Rubio K, et al. Among authors: tresch a. Discov Oncol. 2023 Oct 3;14(1):181. doi: 10.1007/s12672-023-00799-9. Discov Oncol. 2023. PMID: 37787775 Free PMC article.

4

Quantitative analysis of processive RNA degradation by the archaeal RNA exosome.

Hartung S, Niederberger T, Hartung M, Tresch A, Hopfner KP. Hartung S, et al. Among authors: tresch a. Nucleic Acids Res. 2010 Aug;38(15):5166-76. doi: 10.1093/nar/gkq238. Epub 2010 Apr 14. Nucleic Acids Res. 2010. PMID: 20392821 Free PMC article.

5

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data.

Zacher B, Kuan PF, Tresch A. Zacher B, et al. Among authors: tresch a. BMC Bioinformatics. 2010 Apr 17;11:194. doi: 10.1186/1471-2105-11-194. BMC Bioinformatics. 2010. PMID: 20398407 Free PMC article.

6

Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast.

Miller C, Schwalb B, Maier K, Schulz D, Dümcke S, Zacher B, Mayer A, Sydow J, Marcinowski L, Dölken L, Martin DE, Tresch A, Cramer P. Miller C, et al. Among authors: tresch a. Mol Syst Biol. 2011 Jan 4;7:458. doi: 10.1038/msb.2010.112. Mol Syst Biol. 2011. PMID: 21206491 Free PMC article.

7

Analysis of Affymetrix ChIP-chip data using starr and R/Bioconductor.

Zacher B, Torkler P, Tresch A. Zacher B, et al. Among authors: tresch a. Cold Spring Harb Protoc. 2011 May 1;2011(5):pdb.top110. doi: 10.1101/pdb.top110. Cold Spring Harb Protoc. 2011. PMID: 21536772

8

Selective phenotyping, entropy reduction, and the mastermind game.

Gagneur J, Elze MC, Tresch A. Gagneur J, et al. Among authors: tresch a. BMC Bioinformatics. 2011 Oct 20;12:406. doi: 10.1186/1471-2105-12-406. BMC Bioinformatics. 2011. PMID: 22014271 Free PMC article.

9

Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA).

Schwalb B, Schulz D, Sun M, Zacher B, Dümcke S, Martin DE, Cramer P, Tresch A. Schwalb B, et al. Among authors: tresch a. Bioinformatics. 2012 Mar 15;28(6):884-5. doi: 10.1093/bioinformatics/bts052. Epub 2012 Jan 28. Bioinformatics. 2012. PMID: 22285829

10

Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data.

Zacher B, Abnaof K, Gade S, Younesi E, Tresch A, Fröhlich H. Zacher B, et al. Among authors: tresch a. Bioinformatics. 2012 Jul 1;28(13):1714-20. doi: 10.1093/bioinformatics/bts257. Epub 2012 May 4. Bioinformatics. 2012. PMID: 22563068

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