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Page 1
Spaced Seed Data Structures for De Novo Assembly.
Birol I, Chu J, Mohamadi H, Jackman SD, Raghavan K, Vandervalk BP, Raymond A, Warren RL. Birol I, et al. Among authors: vandervalk bp. Int J Genomics. 2015;2015:196591. doi: 10.1155/2015/196591. Epub 2015 Oct 11. Int J Genomics. 2015. PMID: 26539459 Free PMC article.
Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.
Birol I, Raymond A, Jackman SD, Pleasance S, Coope R, Taylor GA, Yuen MM, Keeling CI, Brand D, Vandervalk BP, Kirk H, Pandoh P, Moore RA, Zhao Y, Mungall AJ, Jaquish B, Yanchuk A, Ritland C, Boyle B, Bousquet J, Ritland K, Mackay J, Bohlmann J, Jones SJ. Birol I, et al. Among authors: vandervalk bp. Bioinformatics. 2013 Jun 15;29(12):1492-7. doi: 10.1093/bioinformatics/btt178. Epub 2013 May 22. Bioinformatics. 2013. PMID: 23698863 Free PMC article.
DIDA: Distributed Indexing Dispatched Alignment.
Mohamadi H, Vandervalk BP, Raymond A, Jackman SD, Chu J, Breshears CP, Birol I. Mohamadi H, et al. Among authors: vandervalk bp. PLoS One. 2015 Apr 29;10(4):e0126409. doi: 10.1371/journal.pone.0126409. eCollection 2015. PLoS One. 2015. PMID: 25923767 Free PMC article.
Sealer: a scalable gap-closing application for finishing draft genomes.
Paulino D, Warren RL, Vandervalk BP, Raymond A, Jackman SD, Birol I. Paulino D, et al. Among authors: vandervalk bp. BMC Bioinformatics. 2015 Jul 25;16(1):230. doi: 10.1186/s12859-015-0663-4. BMC Bioinformatics. 2015. PMID: 26209068 Free PMC article.
Konnector v2.0: pseudo-long reads from paired-end sequencing data.
Vandervalk BP, Yang C, Xue Z, Raghavan K, Chu J, Mohamadi H, Jackman SD, Chiu R, Warren RL, Birol I. Vandervalk BP, et al. BMC Med Genomics. 2015;8 Suppl 3(Suppl 3):S1. doi: 10.1186/1755-8794-8-S3-S1. Epub 2015 Sep 23. BMC Med Genomics. 2015. PMID: 26399504 Free PMC article.
Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation.
Jackman SD, Warren RL, Gibb EA, Vandervalk BP, Mohamadi H, Chu J, Raymond A, Pleasance S, Coope R, Wildung MR, Ritland CE, Bousquet J, Jones SJ, Bohlmann J, Birol I. Jackman SD, et al. Among authors: vandervalk bp. Genome Biol Evol. 2015 Dec 8;8(1):29-41. doi: 10.1093/gbe/evv244. Genome Biol Evol. 2015. PMID: 26645680 Free PMC article.
ntHash: recursive nucleotide hashing.
Mohamadi H, Chu J, Vandervalk BP, Birol I. Mohamadi H, et al. Among authors: vandervalk bp. Bioinformatics. 2016 Nov 15;32(22):3492-3494. doi: 10.1093/bioinformatics/btw397. Epub 2016 Jul 16. Bioinformatics. 2016. PMID: 27423894 Free PMC article.
22 results