Berghuis BA - Search Results

1

Backtracking behavior in viral RNA-dependent RNA polymerase provides the basis for a second initiation site.

Dulin D, Vilfan ID, Berghuis BA, Poranen MM, Depken M, Dekker NH. Dulin D, et al. Among authors: berghuis ba. Nucleic Acids Res. 2015 Dec 2;43(21):10421-9. doi: 10.1093/nar/gkv1098. Epub 2015 Oct 22. Nucleic Acids Res. 2015. PMID: 26496948 Free PMC article.

2

Elongation-Competent Pauses Govern the Fidelity of a Viral RNA-Dependent RNA Polymerase.

Dulin D, Vilfan ID, Berghuis BA, Hage S, Bamford DH, Poranen MM, Depken M, Dekker NH. Dulin D, et al. Among authors: berghuis ba. Cell Rep. 2015 Feb 17;10(6):983-992. doi: 10.1016/j.celrep.2015.01.031. Epub 2015 Feb 12. Cell Rep. 2015. PMID: 25683720 Free article.

3

Invincible DNA tethers: covalent DNA anchoring for enhanced temporal and force stability in magnetic tweezers experiments.

Janissen R, Berghuis BA, Dulin D, Wink M, van Laar T, Dekker NH. Janissen R, et al. Among authors: berghuis ba. Nucleic Acids Res. 2014 Oct;42(18):e137. doi: 10.1093/nar/gku677. Epub 2014 Aug 19. Nucleic Acids Res. 2014. PMID: 25140010 Free PMC article.

4

Untangling reaction pathways through modern approaches to high-throughput single-molecule force-spectroscopy experiments.

Dulin D, Berghuis BA, Depken M, Dekker NH. Dulin D, et al. Among authors: berghuis ba. Curr Opin Struct Biol. 2015 Oct;34:116-22. doi: 10.1016/j.sbi.2015.08.007. Epub 2015 Oct 1. Curr Opin Struct Biol. 2015. PMID: 26434413 Review.

5

A force calibration standard for magnetic tweezers.

Yu Z, Dulin D, Cnossen J, Köber M, van Oene MM, Ordu O, Berghuis BA, Hensgens T, Lipfert J, Dekker NH. Yu Z, et al. Among authors: berghuis ba. Rev Sci Instrum. 2014 Dec;85(12):123114. doi: 10.1063/1.4904148. Rev Sci Instrum. 2014. PMID: 25554279

6

Strand separation establishes a sustained lock at the Tus-Ter replication fork barrier.

Berghuis BA, Dulin D, Xu ZQ, van Laar T, Cross B, Janissen R, Jergic S, Dixon NE, Depken M, Dekker NH. Berghuis BA, et al. Nat Chem Biol. 2015 Aug;11(8):579-85. doi: 10.1038/nchembio.1857. Epub 2015 Jul 6. Nat Chem Biol. 2015. PMID: 26147356

7

High-throughput, high-force probing of DNA-protein interactions with magnetic tweezers.

Berghuis BA, Köber M, van Laar T, Dekker NH. Berghuis BA, et al. Methods. 2016 Aug 1;105:90-8. doi: 10.1016/j.ymeth.2016.03.025. Epub 2016 Mar 30. Methods. 2016. PMID: 27038745 Free article.

8

What is all this fuss about Tus? Comparison of recent findings from biophysical and biochemical experiments.

Berghuis BA, Raducanu VS, Elshenawy MM, Jergic S, Depken M, Dixon NE, Hamdan SM, Dekker NH. Berghuis BA, et al. Crit Rev Biochem Mol Biol. 2018 Feb;53(1):49-63. doi: 10.1080/10409238.2017.1394264. Epub 2017 Nov 6. Crit Rev Biochem Mol Biol. 2018. PMID: 29108427 Free article. Review.

9

Exploring the structure of the N-terminal domain of CP29 with ultrafast fluorescence spectroscopy.

Berghuis BA, Spruijt RB, Koehorst RB, van Hoek A, Laptenok SP, van Oort B, van Amerongen H. Berghuis BA, et al. Eur Biophys J. 2010 Mar;39(4):631-8. doi: 10.1007/s00249-009-0519-9. Epub 2009 Jul 29. Eur Biophys J. 2010. PMID: 19639311 Free PMC article.

10

Northstar enables automatic classification of known and novel cell types from tumor samples.

Zanini F, Berghuis BA, Jones RC, Nicolis di Robilant B, Nong RY, Norton JA, Clarke MF, Quake SR. Zanini F, et al. Among authors: berghuis ba. Sci Rep. 2020 Sep 17;10(1):15251. doi: 10.1038/s41598-020-71805-1. Sci Rep. 2020. PMID: 32943655 Free PMC article.

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