Shyr Y - Search Results

1

Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data.

Tu C, Sheng Q, Li J, Ma D, Shen X, Wang X, Shyr Y, Yi Z, Qu J. Tu C, et al. Among authors: shyr y. J Proteome Res. 2015 Nov 6;14(11):4662-73. doi: 10.1021/acs.jproteome.5b00536. Epub 2015 Sep 30. J Proteome Res. 2015. PMID: 26390080 Free PMC article.

2

Proteomic-based prognosis of brain tumor patients using direct-tissue matrix-assisted laser desorption ionization mass spectrometry.

Schwartz SA, Weil RJ, Thompson RC, Shyr Y, Moore JH, Toms SA, Johnson MD, Caprioli RM. Schwartz SA, et al. Among authors: shyr y. Cancer Res. 2005 Sep 1;65(17):7674-81. doi: 10.1158/0008-5472.CAN-04-3016. Cancer Res. 2005. PMID: 16140934

3

Genomic and proteomic analysis of mammary tumors arising in transgenic mice.

Xie L, Xu BJ, Gorska AE, Shyr Y, Schwartz SA, Cheng N, Levy S, Bierie B, Caprioli RM, Moses HL. Xie L, et al. Among authors: shyr y. J Proteome Res. 2005 Nov-Dec;4(6):2088-98. doi: 10.1021/pr050214l. J Proteome Res. 2005. PMID: 16335954

4

Comparative shotgun proteomics using spectral count data and quasi-likelihood modeling.

Li M, Gray W, Zhang H, Chung CH, Billheimer D, Yarbrough WG, Liebler DC, Shyr Y, Slebos RJ. Li M, et al. Among authors: shyr y. J Proteome Res. 2010 Aug 6;9(8):4295-305. doi: 10.1021/pr100527g. J Proteome Res. 2010. PMID: 20586475 Free PMC article.

5

Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data.

Guo Y, Sheng Q, Li J, Ye F, Samuels DC, Shyr Y. Guo Y, et al. Among authors: shyr y. PLoS One. 2013 Aug 20;8(8):e71462. doi: 10.1371/journal.pone.0071462. eCollection 2013. PLoS One. 2013. PMID: 23977046 Free PMC article.

6

Very low-level heteroplasmy mtDNA variations are inherited in humans.

Guo Y, Li CI, Sheng Q, Winther JF, Cai Q, Boice JD, Shyr Y. Guo Y, et al. Among authors: shyr y. J Genet Genomics. 2013 Dec 20;40(12):607-15. doi: 10.1016/j.jgg.2013.10.003. Epub 2013 Dec 8. J Genet Genomics. 2013. PMID: 24377867 Free PMC article.

7

Multi-perspective quality control of Illumina exome sequencing data using QC3.

Guo Y, Zhao S, Sheng Q, Ye F, Li J, Lehmann B, Pietenpol J, Samuels DC, Shyr Y. Guo Y, et al. Among authors: shyr y. Genomics. 2014 May-Jun;103(5-6):323-8. doi: 10.1016/j.ygeno.2014.03.006. Epub 2014 Apr 3. Genomics. 2014. PMID: 24703969 Free PMC article.

8

MultiRankSeq: multiperspective approach for RNAseq differential expression analysis and quality control.

Guo Y, Zhao S, Ye F, Sheng Q, Shyr Y. Guo Y, et al. Among authors: shyr y. Biomed Res Int. 2014;2014:248090. doi: 10.1155/2014/248090. Epub 2014 May 27. Biomed Res Int. 2014. PMID: 24977143 Free PMC article.

9

Advanced heat map and clustering analysis using heatmap3.

Zhao S, Guo Y, Sheng Q, Shyr Y. Zhao S, et al. Among authors: shyr y. Biomed Res Int. 2014;2014:986048. doi: 10.1155/2014/986048. Epub 2014 Jul 16. Biomed Res Int. 2014. PMID: 25143956 Free PMC article.

10

DupChecker: a bioconductor package for checking high-throughput genomic data redundancy in meta-analysis.

Sheng Q, Shyr Y, Chen X. Sheng Q, et al. Among authors: shyr y. BMC Bioinformatics. 2014 Sep 30;15(1):323. doi: 10.1186/1471-2105-15-323. BMC Bioinformatics. 2014. PMID: 25267467 Free PMC article.

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