Chen R - Search Results

1

DIVAS: a centralized genetic variant repository representing 150,000 individuals from multiple disease cohorts.

Cheng WY, Hakenberg J, Li SD, Chen R. Cheng WY, et al. Among authors: chen r. Bioinformatics. 2016 Jan 1;32(1):151-3. doi: 10.1093/bioinformatics/btv511. Epub 2015 Sep 12. Bioinformatics. 2016. PMID: 26363178 Free PMC article.

2

Integrating 400 million variants from 80,000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts.

Hakenberg J, Cheng WY, Thomas P, Wang YC, Uzilov AV, Chen R. Hakenberg J, et al. Among authors: chen r. BMC Bioinformatics. 2016 Jan 8;17:24. doi: 10.1186/s12859-015-0865-9. BMC Bioinformatics. 2016. PMID: 26746786 Free PMC article.

3

An integrative pipeline for multi-modal discovery of disease relationships.

Glicksberg BS, Li L, Cheng WY, Shameer K, Hakenberg J, Castellanos R, Ma M, Shi L, Shah H, Dudley JT, Chen R. Glicksberg BS, et al. Among authors: chen r. Pac Symp Biocomput. 2015;20:407-18. Pac Symp Biocomput. 2015. PMID: 25592600 Free PMC article.

4

ClinLabGeneticist: a tool for clinical management of genetic variants from whole exome sequencing in clinical genetic laboratories.

Wang J, Liao J, Zhang J, Cheng WY, Hakenberg J, Ma M, Webb BD, Ramasamudram-Chakravarthi R, Karger L, Mehta L, Kornreich R, Diaz GA, Li S, Edelmann L, Chen R. Wang J, et al. Among authors: chen r. Genome Med. 2015 Jul 29;7(1):77. doi: 10.1186/s13073-015-0207-6. Genome Med. 2015. PMID: 26338694 Free PMC article.

5

Analysis of 589,306 genomes identifies individuals resilient to severe Mendelian childhood diseases.

Chen R, Shi L, Hakenberg J, Naughton B, Sklar P, Zhang J, Zhou H, Tian L, Prakash O, Lemire M, Sleiman P, Cheng WY, Chen W, Shah H, Shen Y, Fromer M, Omberg L, Deardorff MA, Zackai E, Bobe JR, Levin E, Hudson TJ, Groop L, Wang J, Hakonarson H, Wojcicki A, Diaz GA, Edelmann L, Schadt EE, Friend SH. Chen R, et al. Among authors: chen w. Nat Biotechnol. 2016 May;34(5):531-8. doi: 10.1038/nbt.3514. Epub 2016 Apr 11. Nat Biotechnol. 2016. PMID: 27065010

6

Identification of type 2 diabetes subgroups through topological analysis of patient similarity.

Li L, Cheng WY, Glicksberg BS, Gottesman O, Tamler R, Chen R, Bottinger EP, Dudley JT. Li L, et al. Among authors: chen r. Sci Transl Med. 2015 Oct 28;7(311):311ra174. doi: 10.1126/scitranslmed.aaa9364. Sci Transl Med. 2015. PMID: 26511511 Free PMC article.

7

Disease-associated variants in different categories of disease located in distinct regulatory elements.

Ma M, Ru Y, Chuang LS, Hsu NY, Shi LS, Hakenberg J, Cheng WY, Uzilov A, Ding W, Glicksberg BS, Chen R. Ma M, et al. Among authors: chen r. BMC Genomics. 2015;16 Suppl 8(Suppl 8):S3. doi: 10.1186/1471-2164-16-S8-S3. Epub 2015 Jun 18. BMC Genomics. 2015. PMID: 26110593 Free PMC article.

8

Development and clinical application of an integrative genomic approach to personalized cancer therapy.

Uzilov AV, Ding W, Fink MY, Antipin Y, Brohl AS, Davis C, Lau CY, Pandya C, Shah H, Kasai Y, Powell J, Micchelli M, Castellanos R, Zhang Z, Linderman M, Kinoshita Y, Zweig M, Raustad K, Cheung K, Castillo D, Wooten M, Bourzgui I, Newman LC, Deikus G, Mathew B, Zhu J, Glicksberg BS, Moe AS, Liao J, Edelmann L, Dudley JT, Maki RG, Kasarskis A, Holcombe RF, Mahajan M, Hao K, Reva B, Longtine J, Starcevic D, Sebra R, Donovan MJ, Li S, Schadt EE, Chen R. Uzilov AV, et al. Among authors: chen r. Genome Med. 2016 Jun 1;8(1):62. doi: 10.1186/s13073-016-0313-0. Genome Med. 2016. PMID: 27245685 Free PMC article.

9

ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression.

Engreitz JM, Chen R, Morgan AA, Dudley JT, Mallelwar R, Butte AJ. Engreitz JM, et al. Among authors: chen r. Bioinformatics. 2011 Dec 1;27(23):3317-8. doi: 10.1093/bioinformatics/btr548. Epub 2011 Oct 3. Bioinformatics. 2011. PMID: 21967760 Free PMC article.

10

Data-driven integration of epidemiological and toxicological data to select candidate interacting genes and environmental factors in association with disease.

Patel CJ, Chen R, Butte AJ. Patel CJ, et al. Among authors: chen r. Bioinformatics. 2012 Jun 15;28(12):i121-6. doi: 10.1093/bioinformatics/bts229. Bioinformatics. 2012. PMID: 22689751 Free PMC article.

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