Li Y - Search Results

1

Disulfide Connectivity Prediction Based on Modelled Protein 3D Structural Information and Random Forest Regression.

Yu DJ, Li Y, Hu J, Yang X, Yang JY, Shen HB. Yu DJ, et al. Among authors: li y. IEEE/ACM Trans Comput Biol Bioinform. 2015 May-Jun;12(3):611-21. doi: 10.1109/TCBB.2014.2359451. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26357272

2

SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network.

Chen MC, Li Y, Zhu YH, Ge F, Yu DJ. Chen MC, et al. Among authors: li y. J Chem Inf Model. 2020 Jun 22;60(6):3295-3303. doi: 10.1021/acs.jcim.9b01207. Epub 2020 May 15. J Chem Inf Model. 2020. PMID: 32338512

3

Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks.

Li Y, Zhang C, Bell EW, Zheng W, Zhou X, Yu DJ, Zhang Y. Li Y, et al. PLoS Comput Biol. 2021 Mar 26;17(3):e1008865. doi: 10.1371/journal.pcbi.1008865. eCollection 2021 Mar. PLoS Comput Biol. 2021. PMID: 33770072 Free PMC article.

4

Protein inter-residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14.

Li Y, Zhang C, Zheng W, Zhou X, Bell EW, Yu DJ, Zhang Y. Li Y, et al. Proteins. 2021 Dec;89(12):1911-1921. doi: 10.1002/prot.26211. Epub 2021 Aug 19. Proteins. 2021. PMID: 34382712 Free PMC article.

5

Ensembling multiple raw coevolutionary features with deep residual neural networks for contact-map prediction in CASP13.

Li Y, Zhang C, Bell EW, Yu DJ, Zhang Y. Li Y, et al. Proteins. 2019 Dec;87(12):1082-1091. doi: 10.1002/prot.25798. Epub 2019 Aug 22. Proteins. 2019. PMID: 31407406 Free PMC article.

6

Deep learning geometrical potential for high-accuracy ab initio protein structure prediction.

Li Y, Zhang C, Yu DJ, Zhang Y. Li Y, et al. iScience. 2022 May 18;25(6):104425. doi: 10.1016/j.isci.2022.104425. eCollection 2022 Jun 17. iScience. 2022. PMID: 35663033 Free PMC article.

7

Fast and accurate Ab Initio Protein structure prediction using deep learning potentials.

Pearce R, Li Y, Omenn GS, Zhang Y. Pearce R, et al. Among authors: li y. PLoS Comput Biol. 2022 Sep 16;18(9):e1010539. doi: 10.1371/journal.pcbi.1010539. eCollection 2022 Sep. PLoS Comput Biol. 2022. PMID: 36112717 Free PMC article.

8

Detecting distant-homology protein structures by aligning deep neural-network based contact maps.

Zheng W, Wuyun Q, Li Y, Mortuza SM, Zhang C, Pearce R, Ruan J, Zhang Y. Zheng W, et al. Among authors: li y. PLoS Comput Biol. 2019 Oct 17;15(10):e1007411. doi: 10.1371/journal.pcbi.1007411. eCollection 2019 Oct. PLoS Comput Biol. 2019. PMID: 31622328 Free PMC article.

9

Protein structure prediction using deep learning distance and hydrogen-bonding restraints in CASP14.

Zheng W, Li Y, Zhang C, Zhou X, Pearce R, Bell EW, Huang X, Zhang Y. Zheng W, et al. Among authors: li y. Proteins. 2021 Dec;89(12):1734-1751. doi: 10.1002/prot.26193. Epub 2021 Aug 7. Proteins. 2021. PMID: 34331351 Free PMC article.

10

FUpred: detecting protein domains through deep-learning-based contact map prediction.

Zheng W, Zhou X, Wuyun Q, Pearce R, Li Y, Zhang Y. Zheng W, et al. Among authors: li y. Bioinformatics. 2020 Jun 1;36(12):3749-3757. doi: 10.1093/bioinformatics/btaa217. Bioinformatics. 2020. PMID: 32227201 Free PMC article.

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