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The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.
Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, Wiggins JL, Storton D, Matese JC, Parsons L, Chang WJ, Bowen MS, Stover NA, Jones TA, Eddy SR, Herrick GA, Doak TG, Wilson RK, Mardis ER, Landweber LF. Swart EC, et al. Among authors: chen x. PLoS Biol. 2013;11(1):e1001473. doi: 10.1371/journal.pbio.1001473. Epub 2013 Jan 29. PLoS Biol. 2013. PMID: 23382650 Free PMC article.
<mds_ies_db>: a database of ciliate genome rearrangements.
Burns J, Kukushkin D, Lindblad K, Chen X, Jonoska N, Landweber LF. Burns J, et al. Among authors: chen x. Nucleic Acids Res. 2016 Jan 4;44(D1):D703-9. doi: 10.1093/nar/gkv1190. Epub 2015 Nov 19. Nucleic Acids Res. 2016. PMID: 26586804 Free PMC article.
The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling.
Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW, Bénard M, Biggar KK, Buchler NE, Bundschuh R, Chen X, Fronick C, Fulton L, Golderer G, Jahn N, Knoop V, Landweber LF, Maric C, Miller D, Noegel AA, Peace R, Pierron G, Sasaki T, Schallenberg-Rüdinger M, Schleicher M, Singh R, Spaller T, Storey KB, Suzuki T, Tomlinson C, Tyson JJ, Warren WC, Werner ER, Werner-Felmayer G, Wilson RK, Winckler T, Gott JM, Glöckner G, Marwan W. Schaap P, et al. Among authors: chen x. Genome Biol Evol. 2015 Nov 27;8(1):109-25. doi: 10.1093/gbe/evv237. Genome Biol Evol. 2015. PMID: 26615215 Free PMC article.
Chromosome fusions triggered by noncoding RNA.
Bracht JR, Wang X, Shetty K, Chen X, Uttarotai GJ, Callihan EC, McCloud SS, Clay DM, Wang J, Nowacki M, Landweber LF. Bracht JR, et al. Among authors: chen x. RNA Biol. 2017 May 4;14(5):620-631. doi: 10.1080/15476286.2016.1195940. Epub 2016 Jun 7. RNA Biol. 2017. PMID: 27267579 Free PMC article.
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