Lawrence N - Search Results

1

A reverse-engineering approach to dissect post-translational modulators of transcription factor's activity from transcriptional data.

Gambardella G, Peluso I, Montefusco S, Bansal M, Medina DL, Lawrence N, di Bernardo D. Gambardella G, et al. Among authors: lawrence n. BMC Bioinformatics. 2015 Sep 3;16:279. doi: 10.1186/s12859-015-0700-3. BMC Bioinformatics. 2015. PMID: 26334955 Free PMC article.

2

A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription.

Sanguinetti G, Rattray M, Lawrence ND. Sanguinetti G, et al. Bioinformatics. 2006 Jul 15;22(14):1753-9. doi: 10.1093/bioinformatics/btl154. Epub 2006 Apr 21. Bioinformatics. 2006. PMID: 16632490

3

Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities.

Sanguinetti G, Lawrence ND, Rattray M. Sanguinetti G, et al. Bioinformatics. 2006 Nov 15;22(22):2775-81. doi: 10.1093/bioinformatics/btl473. Epub 2006 Sep 11. Bioinformatics. 2006. PMID: 16966362

4

Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters.

Hensman J, Lawrence ND, Rattray M. Hensman J, et al. BMC Bioinformatics. 2013 Aug 20;14:252. doi: 10.1186/1471-2105-14-252. BMC Bioinformatics. 2013. PMID: 23962281 Free PMC article.

5

Efficient inference for sparse latent variable models of transcriptional regulation.

Dai Z, Iqbal M, Lawrence ND, Rattray M. Dai Z, et al. Bioinformatics. 2017 Dec 1;33(23):3776-3783. doi: 10.1093/bioinformatics/btx508. Bioinformatics. 2017. PMID: 28961802 Free PMC article.

6

puma: a Bioconductor package for propagating uncertainty in microarray analysis.

Pearson RD, Liu X, Sanguinetti G, Milo M, Lawrence ND, Rattray M. Pearson RD, et al. BMC Bioinformatics. 2009 Jul 9;10:211. doi: 10.1186/1471-2105-10-211. BMC Bioinformatics. 2009. PMID: 19589155 Free PMC article.

7

TFInfer: a tool for probabilistic inference of transcription factor activities.

Asif HM, Rolfe MD, Green J, Lawrence ND, Rattray M, Sanguinetti G. Asif HM, et al. Bioinformatics. 2010 Oct 15;26(20):2635-6. doi: 10.1093/bioinformatics/btq469. Epub 2010 Aug 24. Bioinformatics. 2010. PMID: 20739311

8

tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductor.

Honkela A, Gao P, Ropponen J, Rattray M, Lawrence ND. Honkela A, et al. Bioinformatics. 2011 Apr 1;27(7):1026-7. doi: 10.1093/bioinformatics/btr057. Epub 2011 Feb 7. Bioinformatics. 2011. PMID: 21300702

9

A simple approach to ranking differentially expressed gene expression time courses through Gaussian process regression.

Kalaitzis AA, Lawrence ND. Kalaitzis AA, et al. BMC Bioinformatics. 2011 May 20;12:180. doi: 10.1186/1471-2105-12-180. BMC Bioinformatics. 2011. PMID: 21599902 Free PMC article.

10

Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison.

Titsias MK, Honkela A, Lawrence ND, Rattray M. Titsias MK, et al. BMC Syst Biol. 2012 May 30;6:53. doi: 10.1186/1752-0509-6-53. BMC Syst Biol. 2012. PMID: 22647244 Free PMC article.

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