Barth D - Search Results

1

GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies.

Boudard M, Bernauer J, Barth D, Cohen J, Denise A. Boudard M, et al. Among authors: barth d. PLoS One. 2015 Aug 27;10(8):e0136444. doi: 10.1371/journal.pone.0136444. eCollection 2015. PLoS One. 2015. PMID: 26313379 Free PMC article.

2

Automated prediction of three-way junction topological families in RNA secondary structures.

Lamiable A, Barth D, Denise A, Quessette F, Vial S, Westhof E. Lamiable A, et al. Among authors: barth d. Comput Biol Chem. 2012 Apr;37:1-5. doi: 10.1016/j.compbiolchem.2011.11.001. Epub 2012 Jan 11. Comput Biol Chem. 2012. PMID: 22326420

3

An algorithmic game-theory approach for coarse-grain prediction of RNA 3D structure.

Lamiable A, Quessette F, Vial S, Barth D, Denise A. Lamiable A, et al. Among authors: barth d. IEEE/ACM Trans Comput Biol Bioinform. 2013 Jan-Feb;10(1):193-9. doi: 10.1109/TCBB.2012.148. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 23702555

4

GARN2: coarse-grained prediction of 3D structure of large RNA molecules by regret minimization.

Boudard M, Barth D, Bernauer J, Denise A, Cohen J. Boudard M, et al. Among authors: barth d. Bioinformatics. 2017 Aug 15;33(16):2479-2486. doi: 10.1093/bioinformatics/btx175. Bioinformatics. 2017. PMID: 28398456

5

On the predictibility of A-minor motifs from their local contexts.

Gianfrotta C, Reinharz V, Lespinet O, Barth D, Denise A. Gianfrotta C, et al. Among authors: barth d. RNA Biol. 2022 Jan;19(1):1208-1227. doi: 10.1080/15476286.2022.2144611. RNA Biol. 2022. PMID: 36384383 Free PMC article.

6

Improving graphs of cycles approach to structural similarity of molecules.

Nouleho Ilemo S, Barth D, David O, Quessette F, Weisser MA, Watel D. Nouleho Ilemo S, et al. Among authors: barth d. PLoS One. 2019 Dec 27;14(12):e0226680. doi: 10.1371/journal.pone.0226680. eCollection 2019. PLoS One. 2019. PMID: 31881046 Free PMC article.

7

Algorithmic Graph Theory, Reinforcement Learning and Game Theory in MD Simulations: From 3D Structures to Topological 2D-Molecular Graphs (2D-MolGraphs) and Vice Versa.

Bougueroua S, Bricage M, Aboulfath Y, Barth D, Gaigeot MP. Bougueroua S, et al. Among authors: barth d. Molecules. 2023 Mar 23;28(7):2892. doi: 10.3390/molecules28072892. Molecules. 2023. PMID: 37049654 Free PMC article.

8

Can one and two-dimensional solid-state NMR fingerprint zeolite framework topology?

Martineau C, Vial S, Barth D, Quessette F, Taulelle F. Martineau C, et al. Among authors: barth d. Solid State Nucl Magn Reson. 2015 Feb;65:84-8. doi: 10.1016/j.ssnmr.2014.10.002. Epub 2014 Oct 23. Solid State Nucl Magn Reson. 2015. PMID: 25454465

9

Graph theory for automatic structural recognition in molecular dynamics simulations.

Bougueroua S, Spezia R, Pezzotti S, Vial S, Quessette F, Barth D, Gaigeot MP. Bougueroua S, et al. Among authors: barth d. J Chem Phys. 2018 Nov 14;149(18):184102. doi: 10.1063/1.5045818. J Chem Phys. 2018. PMID: 30441919

10

Time-Resolved Graphs of Polymorphic Cycles for H-Bonded Network Identification in Flexible Biomolecules.

Aboulfath Y, Bougueroua S, Cimas A, Barth D, Gaigeot MP. Aboulfath Y, et al. Among authors: barth d. J Chem Theory Comput. 2024 Feb 13;20(3):1019-1035. doi: 10.1021/acs.jctc.3c01031. Epub 2024 Jan 18. J Chem Theory Comput. 2024. PMID: 38236138

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