Clark TA - Search Results

1

A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae.

Atack JM, Srikhanta YN, Fox KL, Jurcisek JA, Brockman KL, Clark TA, Boitano M, Power PM, Jen FE, McEwan AG, Grimmond SM, Smith AL, Barenkamp SJ, Korlach J, Bakaletz LO, Jennings MP. Atack JM, et al. Among authors: clark ta. Nat Commun. 2015 Jul 28;6:7828. doi: 10.1038/ncomms8828. Nat Commun. 2015. PMID: 26215614 Free PMC article.

2

A random six-phase switch regulates pneumococcal virulence via global epigenetic changes.

Manso AS, Chai MH, Atack JM, Furi L, De Ste Croix M, Haigh R, Trappetti C, Ogunniyi AD, Shewell LK, Boitano M, Clark TA, Korlach J, Blades M, Mirkes E, Gorban AN, Paton JC, Jennings MP, Oggioni MR. Manso AS, et al. Among authors: clark ta. Nat Commun. 2014 Sep 30;5:5055. doi: 10.1038/ncomms6055. Nat Commun. 2014. PMID: 25268848 Free PMC article.

3

Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N(6)-adenine DNA methyltransferases of Neisseria meningitidis.

Seib KL, Jen FE, Tan A, Scott AL, Kumar R, Power PM, Chen LT, Wu HJ, Wang AH, Hill DM, Luyten YA, Morgan RD, Roberts RJ, Maiden MC, Boitano M, Clark TA, Korlach J, Rao DN, Jennings MP. Seib KL, et al. Among authors: clark ta. Nucleic Acids Res. 2015 Apr 30;43(8):4150-62. doi: 10.1093/nar/gkv219. Epub 2015 Apr 6. Nucleic Acids Res. 2015. PMID: 25845594 Free PMC article.

4

Complete Genome Sequence of Moraxella catarrhalis Strain CCRI-195ME, Isolated from the Middle Ear.

Tan A, Blakeway LV, Bakaletz LO, Boitano M, Clark TA, Korlach J, Jennings MP, Peak IR, Seib KL. Tan A, et al. Among authors: clark ta. Genome Announc. 2017 May 25;5(21):e00384-17. doi: 10.1128/genomeA.00384-17. Genome Announc. 2017. PMID: 28546484 Free PMC article.

5

Methylomic and phenotypic analysis of the ModH5 phasevarion of Helicobacter pylori.

Srikhanta YN, Gorrell RJ, Power PM, Tsyganov K, Boitano M, Clark TA, Korlach J, Hartland EL, Jennings MP, Kwok T. Srikhanta YN, et al. Among authors: clark ta. Sci Rep. 2017 Nov 23;7(1):16140. doi: 10.1038/s41598-017-15721-x. Sci Rep. 2017. PMID: 29170397 Free PMC article.

6

Direct detection of DNA methylation during single-molecule, real-time sequencing.

Flusberg BA, Webster DR, Lee JH, Travers KJ, Olivares EC, Clark TA, Korlach J, Turner SW. Flusberg BA, et al. Among authors: clark ta. Nat Methods. 2010 Jun;7(6):461-5. doi: 10.1038/nmeth.1459. Epub 2010 May 9. Nat Methods. 2010. PMID: 20453866 Free PMC article.

7

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing.

Clark TA, Murray IA, Morgan RD, Kislyuk AO, Spittle KE, Boitano M, Fomenkov A, Roberts RJ, Korlach J. Clark TA, et al. Nucleic Acids Res. 2012 Feb;40(4):e29. doi: 10.1093/nar/gkr1146. Epub 2011 Dec 7. Nucleic Acids Res. 2012. PMID: 22156058 Free PMC article.

8

ModM DNA methyltransferase methylome analysis reveals a potential role for Moraxella catarrhalis phasevarions in otitis media.

Blakeway LV, Power PM, Jen FE, Worboys SR, Boitano M, Clark TA, Korlach J, Bakaletz LO, Jennings MP, Peak IR, Seib KL. Blakeway LV, et al. Among authors: clark ta. FASEB J. 2014 Dec;28(12):5197-207. doi: 10.1096/fj.14-256578. Epub 2014 Sep 2. FASEB J. 2014. PMID: 25183669

9

SMRT-Cappable-seq reveals complex operon variants in bacteria.

Yan B, Boitano M, Clark TA, Ettwiller L. Yan B, et al. Among authors: clark ta. Nat Commun. 2018 Sep 10;9(1):3676. doi: 10.1038/s41467-018-05997-6. Nat Commun. 2018. PMID: 30201986 Free PMC article.

10

Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences.

Cao B, Chen C, DeMott MS, Cheng Q, Clark TA, Xiong X, Zheng X, Butty V, Levine SS, Yuan G, Boitano M, Luong K, Song Y, Zhou X, Deng Z, Turner SW, Korlach J, You D, Wang L, Chen S, Dedon PC. Cao B, et al. Among authors: clark ta. Nat Commun. 2014 Jun 5;5:3951. doi: 10.1038/ncomms4951. Nat Commun. 2014. PMID: 24899568 Free PMC article.

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