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71 results

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Page 1
A compendium of RNA-binding motifs for decoding gene regulation.
Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, Yarosh CA, Kelly SM, Nabet B, Mecenas D, Li W, Laishram RS, Qiao M, Lipshitz HD, Piano F, Corbett AH, Carstens RP, Frey BJ, Anderson RA, Lynch KW, Penalva LO, Lei EP, Fraser AG, Blencowe BJ, Morris QD, Hughes TR. Ray D, et al. Among authors: frey bj. Nature. 2013 Jul 11;499(7457):172-7. doi: 10.1038/nature12311. Nature. 2013. PMID: 23846655 Free PMC article.
Network cleanup.
Alipanahi B, Frey BJ. Alipanahi B, et al. Among authors: frey bj. Nat Biotechnol. 2013 Aug;31(8):714-5. doi: 10.1038/nbt.2657. Nat Biotechnol. 2013. PMID: 23929347 No abstract available.
C2H2 zinc finger proteins greatly expand the human regulatory lexicon.
Najafabadi HS, Mnaimneh S, Schmitges FW, Garton M, Lam KN, Yang A, Albu M, Weirauch MT, Radovani E, Kim PM, Greenblatt J, Frey BJ, Hughes TR. Najafabadi HS, et al. Among authors: frey bj. Nat Biotechnol. 2015 May;33(5):555-62. doi: 10.1038/nbt.3128. Epub 2015 Feb 18. Nat Biotechnol. 2015. PMID: 25690854
Deep learning in biomedicine.
Wainberg M, Merico D, Delong A, Frey BJ. Wainberg M, et al. Among authors: frey bj. Nat Biotechnol. 2018 Oct;36(9):829-838. doi: 10.1038/nbt.4233. Epub 2018 Sep 6. Nat Biotechnol. 2018. PMID: 30188539
MBNL proteins repress ES-cell-specific alternative splicing and reprogramming.
Han H, Irimia M, Ross PJ, Sung HK, Alipanahi B, David L, Golipour A, Gabut M, Michael IP, Nachman EN, Wang E, Trcka D, Thompson T, O'Hanlon D, Slobodeniuc V, Barbosa-Morais NL, Burge CB, Moffat J, Frey BJ, Nagy A, Ellis J, Wrana JL, Blencowe BJ. Han H, et al. Among authors: frey bj. Nature. 2013 Jun 13;498(7453):241-5. doi: 10.1038/nature12270. Epub 2013 Jun 5. Nature. 2013. PMID: 23739326 Free PMC article.
RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease.
Xiong HY, Alipanahi B, Lee LJ, Bretschneider H, Merico D, Yuen RK, Hua Y, Gueroussov S, Najafabadi HS, Hughes TR, Morris Q, Barash Y, Krainer AR, Jojic N, Scherer SW, Blencowe BJ, Frey BJ. Xiong HY, et al. Among authors: frey bj. Science. 2015 Jan 9;347(6218):1254806. doi: 10.1126/science.1254806. Epub 2014 Dec 18. Science. 2015. PMID: 25525159 Free PMC article.
Does conservation account for splicing patterns?
Wainberg M, Alipanahi B, Frey B. Wainberg M, et al. BMC Genomics. 2016 Oct 7;17(1):787. doi: 10.1186/s12864-016-3121-4. BMC Genomics. 2016. PMID: 27717327 Free PMC article.
Inference of the human polyadenylation code.
Leung MKK, Delong A, Frey BJ. Leung MKK, et al. Among authors: frey bj. Bioinformatics. 2018 Sep 1;34(17):2889-2898. doi: 10.1093/bioinformatics/bty211. Bioinformatics. 2018. PMID: 29648582 Free PMC article.
71 results