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Page 1
The evolutionary history of ferns inferred from 25 low-copy nuclear genes.
Rothfels CJ, Li FW, Sigel EM, Huiet L, Larsson A, Burge DO, Ruhsam M, Deyholos M, Soltis DE, Stewart CN Jr, Shaw SW, Pokorny L, Chen T, dePamphilis C, DeGironimo L, Chen L, Wei X, Sun X, Korall P, Stevenson DW, Graham SW, Wong GK, Pryer KM. Rothfels CJ, et al. Among authors: stevenson dw. Am J Bot. 2015 Jul;102(7):1089-107. doi: 10.3732/ajb.1500089. Epub 2015 Jul 16. Am J Bot. 2015. PMID: 26199366 Free article.
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).
Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, Koonin EV, Mishler BD, Philippe H, Pires JC, Qiu YL, Rhee SY, Sjölander K, Soltis DE, Soltis PS, Stevenson DW, Wall K, Warnow T, Zmasek C. Leebens-Mack J, et al. Among authors: stevenson dw. OMICS. 2006 Summer;10(2):231-7. doi: 10.1089/omi.2006.10.231. OMICS. 2006. PMID: 16901231 Free PMC article. Review.
A genome triplication associated with early diversification of the core eudicots.
Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, Deyholos MK, Kutchan TM, Chanderbali AS, Soltis PS, Stevenson DW, McCombie R, Pires JC, Wong GK, Soltis DE, Depamphilis CW. Jiao Y, et al. Among authors: stevenson dw. Genome Biol. 2012 Jan 26;13(1):R3. doi: 10.1186/gb-2012-13-1-r3. Genome Biol. 2012. PMID: 22280555 Free PMC article.
Phylogeny of the Asparagales based on three plastid and two mitochondrial genes.
Seberg O, Petersen G, Davis JI, Pires JC, Stevenson DW, Chase MW, Fay MF, Devey DS, Jørgensen T, Sytsma KJ, Pillon Y. Seberg O, et al. Among authors: stevenson dw. Am J Bot. 2012 May;99(5):875-89. doi: 10.3732/ajb.1100468. Epub 2012 Apr 26. Am J Bot. 2012. PMID: 22539521 Free article.
Ontologies as integrative tools for plant science.
Walls RL, Athreya B, Cooper L, Elser J, Gandolfo MA, Jaiswal P, Mungall CJ, Preece J, Rensing S, Smith B, Stevenson DW. Walls RL, et al. Among authors: stevenson dw. Am J Bot. 2012 Aug;99(8):1263-75. doi: 10.3732/ajb.1200222. Epub 2012 Jul 30. Am J Bot. 2012. PMID: 22847540 Free PMC article.
Transcriptome-mining for single-copy nuclear markers in ferns.
Rothfels CJ, Larsson A, Li FW, Sigel EM, Huiet L, Burge DO, Ruhsam M, Graham SW, Stevenson DW, Wong GK, Korall P, Pryer KM. Rothfels CJ, et al. Among authors: stevenson dw. PLoS One. 2013 Oct 8;8(10):e76957. doi: 10.1371/journal.pone.0076957. eCollection 2013. PLoS One. 2013. PMID: 24116189 Free PMC article.
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns.
Li FW, Villarreal JC, Kelly S, Rothfels CJ, Melkonian M, Frangedakis E, Ruhsam M, Sigel EM, Der JP, Pittermann J, Burge DO, Pokorny L, Larsson A, Chen T, Weststrand S, Thomas P, Carpenter E, Zhang Y, Tian Z, Chen L, Yan Z, Zhu Y, Sun X, Wang J, Stevenson DW, Crandall-Stotler BJ, Shaw AJ, Deyholos MK, Soltis DE, Graham SW, Windham MD, Langdale JA, Wong GK, Mathews S, Pryer KM. Li FW, et al. Among authors: stevenson dw. Proc Natl Acad Sci U S A. 2014 May 6;111(18):6672-7. doi: 10.1073/pnas.1319929111. Epub 2014 Apr 14. Proc Natl Acad Sci U S A. 2014. PMID: 24733898 Free PMC article.
Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor.
Floyd SK, Ryan JG, Conway SJ, Brenner E, Burris KP, Burris JN, Chen T, Edger PP, Graham SW, Leebens-Mack JH, Pires JC, Rothfels CJ, Sigel EM, Stevenson DW, Neal Stewart C Jr, Wong GK, Bowman JL. Floyd SK, et al. Among authors: stevenson dw. Mol Phylogenet Evol. 2014 Dec;81:159-73. doi: 10.1016/j.ympev.2014.06.017. Epub 2014 Sep 27. Mol Phylogenet Evol. 2014. PMID: 25263420 Free article.
Between two fern genomes.
Sessa EB, Banks JA, Barker MS, Der JP, Duffy AM, Graham SW, Hasebe M, Langdale J, Li FW, Marchant DB, Pryer KM, Rothfels CJ, Roux SJ, Salmi ML, Sigel EM, Soltis DE, Soltis PS, Stevenson DW, Wolf PG. Sessa EB, et al. Among authors: stevenson dw. Gigascience. 2014 Sep 25;3:15. doi: 10.1186/2047-217X-3-15. eCollection 2014. Gigascience. 2014. PMID: 25324969 Free PMC article. Review.
97 results