Tan Z - Search Results

1

Large-scale asynchronous and distributed multidimensional replica exchange molecular simulations and efficiency analysis.

Xia J, Flynn WF, Gallicchio E, Zhang BW, He P, Tan Z, Levy RM. Xia J, et al. Among authors: tan z. J Comput Chem. 2015 Sep 5;36(23):1772-85. doi: 10.1002/jcc.23996. Epub 2015 Jul 7. J Comput Chem. 2015. PMID: 26149645 Free PMC article.

2

Theory of binless multi-state free energy estimation with applications to protein-ligand binding.

Tan Z, Gallicchio E, Lapelosa M, Levy RM. Tan Z, et al. J Chem Phys. 2012 Apr 14;136(14):144102. doi: 10.1063/1.3701175. J Chem Phys. 2012. PMID: 22502496 Free PMC article.

3

Deep sequencing of protease inhibitor resistant HIV patient isolates reveals patterns of correlated mutations in Gag and protease.

Flynn WF, Chang MW, Tan Z, Oliveira G, Yuan J, Okulicz JF, Torbett BE, Levy RM. Flynn WF, et al. Among authors: tan z. PLoS Comput Biol. 2015 Apr 20;11(4):e1004249. doi: 10.1371/journal.pcbi.1004249. eCollection 2015 Apr. PLoS Comput Biol. 2015. PMID: 25894830 Free PMC article.

4

A Stochastic Solution to the Unbinned WHAM Equations.

Zhang BW, Xia J, Tan Z, Levy RM. Zhang BW, et al. Among authors: tan z. J Phys Chem Lett. 2015 Oct 1;6(19):3834-40. doi: 10.1021/acs.jpclett.5b01771. Epub 2015 Sep 14. J Phys Chem Lett. 2015. PMID: 26722879 Free PMC article.

5

Locally weighted histogram analysis and stochastic solution for large-scale multi-state free energy estimation.

Tan Z, Xia J, Zhang BW, Levy RM. Tan Z, et al. J Chem Phys. 2016 Jan 21;144(3):034107. doi: 10.1063/1.4939768. J Chem Phys. 2016. PMID: 26801020 Free PMC article.

6

Simulating Replica Exchange: Markov State Models, Proposal Schemes, and the Infinite Swapping Limit.

Zhang BW, Dai W, Gallicchio E, He P, Xia J, Tan Z, Levy RM. Zhang BW, et al. Among authors: tan z. J Phys Chem B. 2016 Aug 25;120(33):8289-301. doi: 10.1021/acs.jpcb.6b02015. Epub 2016 Apr 29. J Phys Chem B. 2016. PMID: 27079355 Free PMC article.

7

Stratified UWHAM and Its Stochastic Approximation for Multicanonical Simulations Which Are Far from Equilibrium.

Zhang BW, Deng N, Tan Z, Levy RM. Zhang BW, et al. Among authors: tan z. J Chem Theory Comput. 2017 Oct 10;13(10):4660-4674. doi: 10.1021/acs.jctc.7b00651. Epub 2017 Sep 28. J Chem Theory Comput. 2017. PMID: 28902500 Free PMC article.

8

Ligand Binding Thermodynamic Cycles: Hysteresis, the Locally Weighted Histogram Analysis Method, and the Overlapping States Matrix.

Cui D, Zhang BW, Tan Z, Levy RM. Cui D, et al. Among authors: tan z. J Chem Theory Comput. 2020 Jan 14;16(1):67-79. doi: 10.1021/acs.jctc.9b00740. Epub 2019 Dec 9. J Chem Theory Comput. 2020. PMID: 31743019 Free PMC article.

9

Comment: improved local efficiency and double robustness.

Tan Z. Tan Z. Int J Biostat. 2008;4(1):Article 10. doi: 10.2202/1557-4679.1109. Int J Biostat. 2008. PMID: 22462123 Free article.

10

Discussion on "Instrumented difference-in-differences" by Ye, Ertefaie, Flory, Hennessy, Small.

Tan Z. Tan Z. Biometrics. 2023 Jun;79(2):587-591. doi: 10.1111/biom.13781. Epub 2022 Nov 30. Biometrics. 2023. PMID: 36448885

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