Parkinson J - Search Results

1

Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis.

Zhang Y, Rowehl L, Krumsiek JM, Orner EP, Shaikh N, Tarr PI, Sodergren E, Weinstock GM, Boedeker EC, Xiong X, Parkinson J, Frank DN, Li E, Gathungu G. Zhang Y, et al. Among authors: parkinson j. PLoS One. 2015 Jun 30;10(6):e0130902. doi: 10.1371/journal.pone.0130902. eCollection 2015. PLoS One. 2015. PMID: 26125937 Free PMC article.

2

The Modular Organization of Protein Interactions in Escherichia coli.

Peregrín-Alvarez JM, Xiong X, Su C, Parkinson J. Peregrín-Alvarez JM, et al. Among authors: parkinson j. PLoS Comput Biol. 2009 Oct;5(10):e1000523. doi: 10.1371/journal.pcbi.1000523. Epub 2009 Oct 2. PLoS Comput Biol. 2009. PMID: 19798435 Free PMC article.

3

Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays.

Persaud A, Alberts P, Amsen EM, Xiong X, Wasmuth J, Saadon Z, Fladd C, Parkinson J, Rotin D. Persaud A, et al. Among authors: parkinson j. Mol Syst Biol. 2009;5:333. doi: 10.1038/msb.2009.85. Epub 2009 Dec 1. Mol Syst Biol. 2009. PMID: 19953087 Free PMC article.

4

The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses.

On T, Xiong X, Pu S, Turinsky A, Gong Y, Emili A, Zhang Z, Greenblatt J, Wodak SJ, Parkinson J. On T, et al. Among authors: parkinson j. Proteins. 2010 Jul;78(9):2075-89. doi: 10.1002/prot.22723. Proteins. 2010. PMID: 20455264

5

Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human.

Pu S, Turinsky AL, Vlasblom J, On T, Xiong X, Emili A, Zhang Z, Greenblatt J, Parkinson J, Wodak SJ. Pu S, et al. Among authors: parkinson j. PLoS One. 2010 Nov 29;5(11):e14122. doi: 10.1371/journal.pone.0014122. PLoS One. 2010. PMID: 21124763 Free PMC article.

6

PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya.

Xiong X, Song H, On T, Lochovsky L, Provart NJ, Parkinson J. Xiong X, et al. Among authors: parkinson j. Bioinformatics. 2011 Mar 15;27(6):877-8. doi: 10.1093/bioinformatics/btr023. Epub 2011 Jan 19. Bioinformatics. 2011. PMID: 21252074

7

Toward a systems level view of the ECM and related proteins: a framework for the systematic definition and analysis of biological systems.

Cromar GL, Xiong X, Chautard E, Ricard-Blum S, Parkinson J. Cromar GL, et al. Among authors: parkinson j. Proteins. 2012 Jun;80(6):1522-44. doi: 10.1002/prot.24036. Epub 2012 Feb 13. Proteins. 2012. PMID: 22275077

8

Generation and analysis of a mouse intestinal metatranscriptome through Illumina based RNA-sequencing.

Xiong X, Frank DN, Robertson CE, Hung SS, Markle J, Canty AJ, McCoy KD, Macpherson AJ, Poussier P, Danska JS, Parkinson J. Xiong X, et al. Among authors: parkinson j. PLoS One. 2012;7(4):e36009. doi: 10.1371/journal.pone.0036009. Epub 2012 Apr 27. PLoS One. 2012. PMID: 22558305 Free PMC article.

9

Identification of a functional connectome for long-term fear memory in mice.

Wheeler AL, Teixeira CM, Wang AH, Xiong X, Kovacevic N, Lerch JP, McIntosh AR, Parkinson J, Frankland PW. Wheeler AL, et al. Among authors: parkinson j. PLoS Comput Biol. 2013;9(1):e1002853. doi: 10.1371/journal.pcbi.1002853. Epub 2013 Jan 3. PLoS Comput Biol. 2013. PMID: 23300432 Free PMC article.

10

New tricks for "old" domains: how novel architectures and promiscuous hubs contributed to the organization and evolution of the ECM.

Cromar G, Wong KC, Loughran N, On T, Song H, Xiong X, Zhang Z, Parkinson J. Cromar G, et al. Among authors: parkinson j. Genome Biol Evol. 2014 Oct 15;6(10):2897-917. doi: 10.1093/gbe/evu228. Genome Biol Evol. 2014. PMID: 25323955 Free PMC article.

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