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Generation of a novel SARS-CoV-2 sub-genomic RNA due to the R203K/G204R variant in nucleocapsid: homologous recombination has potential to change SARS-CoV-2 at both protein and RNA level.
Leary S, Gaudieri S, Parker MD, Chopra A, James I, Pakala S, Alves E, John M, Lindsey BB, Keeley AJ, Rowland-Jones SL, Swanson MS, Ostrov DA, Bubenik JL, Das S, Sidney J, Sette A; COVID-19 Genomics UK (COG-UK) consortium; de Silva TI, Phillips E, Mallal S. Leary S, et al. Among authors: gaudieri s. bioRxiv [Preprint]. 2021 Aug 6:2020.04.10.029454. doi: 10.1101/2020.04.10.029454. bioRxiv. 2021. Update in: Pathog Immun. 2021 Aug 20;6(2):27-49. doi: 10.20411/pai.v6i2.460 PMID: 33880475 Free PMC article. Updated. Preprint.
Tracking virus-specific CD4+ T cells during and after acute hepatitis C virus infection.
Lucas M, Ulsenheimer A, Pfafferot K, Heeg MH, Gaudieri S, Grüner N, Rauch A, Gerlach JT, Jung MC, Zachoval R, Pape GR, Schraut W, Santantonio T, Nitschko H, Obermeier M, Phillips R, Scriba TJ, Semmo N, Day C, Weber JN, Fidler S, Thimme R, Haberstroh A, Baumert TF, Klenerman P, Diepolder HM. Lucas M, et al. Among authors: gaudieri s. PLoS One. 2007 Jul 25;2(7):e649. doi: 10.1371/journal.pone.0000649. PLoS One. 2007. PMID: 17653276 Free PMC article.
Divergent adaptation of hepatitis C virus genotypes 1 and 3 to human leukocyte antigen-restricted immune pressure.
Rauch A, James I, Pfafferott K, Nolan D, Klenerman P, Cheng W, Mollison L, McCaughan G, Shackel N, Jeffrey GP, Baker R, Freitas E, Humphreys I, Furrer H, Günthard HF, Hirschel B, Mallal S, John M, Lucas M, Barnes E, Gaudieri S. Rauch A, et al. Among authors: gaudieri s. Hepatology. 2009 Oct;50(4):1017-29. doi: 10.1002/hep.23101. Hepatology. 2009. PMID: 19670417
Full-length characterization of hepatitis C virus subtype 3a reveals novel hypervariable regions under positive selection during acute infection.
Humphreys I, Fleming V, Fabris P, Parker J, Schulenberg B, Brown A, Demetriou C, Gaudieri S, Pfafferott K, Lucas M, Collier J, Huang KH, Pybus OG, Klenerman P, Barnes E. Humphreys I, et al. Among authors: gaudieri s. J Virol. 2009 Nov;83(22):11456-66. doi: 10.1128/JVI.00884-09. Epub 2009 Sep 9. J Virol. 2009. PMID: 19740991 Free PMC article.
Cellular immune responses to HCV core increase and HCV RNA levels decrease during successful antiretroviral therapy.
Rohrbach J, Robinson N, Harcourt G, Hammond E, Gaudieri S, Gorgievski M, Telenti A, Keiser O, Günthard HF, Hirschel B, Hoffmann M, Bernasconi E, Battegay M, Furrer H, Klenerman P, Rauch A; Swiss HIV Cohort Study. Rohrbach J, et al. Among authors: gaudieri s. Gut. 2010 Sep;59(9):1252-8. doi: 10.1136/gut.2009.205971. Epub 2010 Jul 26. Gut. 2010. PMID: 20660698 Free article. Clinical Trial.
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