Cingolani P - Search Results

1

Lead exposure induces changes in 5-hydroxymethylcytosine clusters in CpG islands in human embryonic stem cells and umbilical cord blood.

Sen A, Cingolani P, Senut MC, Land S, Mercado-Garcia A, Tellez-Rojo MM, Baccarelli AA, Wright RO, Ruden DM. Sen A, et al. Among authors: cingolani p. Epigenetics. 2015;10(7):607-21. doi: 10.1080/15592294.2015.1050172. Epigenetics. 2015. PMID: 26046694 Free PMC article.

2

Lead exposure disrupts global DNA methylation in human embryonic stem cells and alters their neuronal differentiation.

Senut MC, Sen A, Cingolani P, Shaik A, Land SJ, Ruden DM. Senut MC, et al. Among authors: cingolani p. Toxicol Sci. 2014 May;139(1):142-61. doi: 10.1093/toxsci/kfu028. Epub 2014 Feb 11. Toxicol Sci. 2014. PMID: 24519525 Free PMC article.

3

Epigenetics of early-life lead exposure and effects on brain development.

Senut MC, Cingolani P, Sen A, Kruger A, Shaik A, Hirsch H, Suhr ST, Ruden D. Senut MC, et al. Among authors: cingolani p. Epigenomics. 2012 Dec;4(6):665-74. doi: 10.2217/epi.12.58. Epigenomics. 2012. PMID: 23244311 Free PMC article. Review.

4

Intronic non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees.

Cingolani P, Cao X, Khetani RS, Chen CC, Coon M, Sammak A, Bollig-Fischer A, Land S, Huang Y, Hudson ME, Garfinkel MD, Zhong S, Robinson GE, Ruden DM. Cingolani P, et al. BMC Genomics. 2013 Sep 30;14:666. doi: 10.1186/1471-2164-14-666. BMC Genomics. 2013. PMID: 24079845 Free PMC article.

5

Epigenetics as an answer to Darwin's "special difficulty," Part 2: natural selection of metastable epialleles in honeybee castes.

Ruden DM, Cingolani PE, Sen A, Qu W, Wang L, Senut MC, Garfinkel MD, Sollars VE, Lu X. Ruden DM, et al. Front Genet. 2015 Feb 24;6:60. doi: 10.3389/fgene.2015.00060. eCollection 2015. Front Genet. 2015. PMID: 25759717 Free PMC article. Review.

6

Using Drosophila melanogaster as a Model for Genotoxic Chemical Mutational Studies with a New Program, SnpSift.

Cingolani P, Patel VM, Coon M, Nguyen T, Land SJ, Ruden DM, Lu X. Cingolani P, et al. Front Genet. 2012 Mar 15;3:35. doi: 10.3389/fgene.2012.00035. eCollection 2012. Front Genet. 2012. PMID: 22435069 Free PMC article.

7

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.

Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Cingolani P, et al. Fly (Austin). 2012 Apr-Jun;6(2):80-92. doi: 10.4161/fly.19695. Fly (Austin). 2012. PMID: 22728672 Free PMC article.

8

A Bioinformatics-Based Alternative mRNA Splicing Code that May Explain Some Disease Mutations Is Conserved in Animals.

Qu W, Cingolani P, Zeeberg BR, Ruden DM. Qu W, et al. Among authors: cingolani p. Front Genet. 2017 Apr 11;8:38. doi: 10.3389/fgene.2017.00038. eCollection 2017. Front Genet. 2017. PMID: 28443131 Free PMC article.

9

Variant Annotation and Functional Prediction: SnpEff.

Cingolani P. Cingolani P. Methods Mol Biol. 2022;2493:289-314. doi: 10.1007/978-1-0716-2293-3_19. Methods Mol Biol. 2022. PMID: 35751823

10

Positional mapping and candidate gene analysis of the mouse Ccs3 locus that regulates differential susceptibility to carcinogen-induced colorectal cancer.

Meunier C, Van Der Kraak L, Turbide C, Groulx N, Labouba I, Cingolani P, Blanchette M, Yeretssian G, Mes-Masson AM, Saleh M, Beauchemin N, Gros P. Meunier C, et al. Among authors: cingolani p. PLoS One. 2013;8(3):e58733. doi: 10.1371/journal.pone.0058733. Epub 2013 Mar 14. PLoS One. 2013. PMID: 23516545 Free PMC article.

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