Wang J - Search Results

1

Free energy landscape and multiple folding pathways of an H-type RNA pseudoknot.

Bian Y, Zhang J, Wang J, Wang J, Wang W. Bian Y, et al. Among authors: wang w, wang j. PLoS One. 2015 Jun 1;10(6):e0129089. doi: 10.1371/journal.pone.0129089. eCollection 2015. PLoS One. 2015. PMID: 26030098 Free PMC article.

2

Studying the unfolding process of protein G and protein L under physical property space.

Zhao L, Wang J, Dou X, Cao Z. Zhao L, et al. Among authors: wang j. BMC Bioinformatics. 2009 Jan 30;10 Suppl 1(Suppl 1):S44. doi: 10.1186/1471-2105-10-S1-S44. BMC Bioinformatics. 2009. PMID: 19208146 Free PMC article.

3

Structural and thermodynamics characters of isolated α-syn12 peptide: long-time temperature replica-exchange molecular dynamics in aqueous solution.

Cao Z, Liu L, Wu P, Wang J. Cao Z, et al. Among authors: wang j. Acta Biochim Biophys Sin (Shanghai). 2011 Mar;43(3):172-80. doi: 10.1093/abbs/gmr002. Epub 2011 Feb 2. Acta Biochim Biophys Sin (Shanghai). 2011. PMID: 21289072 Free article.

4

The effect of C-terminal helix on the stability of FF domain studied by molecular dynamics simulation.

Zhao L, Cao Z, Wang J. Zhao L, et al. Among authors: wang j. Int J Mol Sci. 2012;13(2):1720-1732. doi: 10.3390/ijms13021720. Epub 2012 Feb 7. Int J Mol Sci. 2012. PMID: 22408419 Free PMC article.

5

Comparison of the structural characteristics of Cu(2+)-bound and unbound α-syn12 peptide obtained in simulations using different force fields.

Cao Z, Liu L, Zhao L, Li H, Wang J. Cao Z, et al. Among authors: wang j. J Mol Model. 2013 Mar;19(3):1237-50. doi: 10.1007/s00894-012-1664-0. Epub 2012 Nov 18. J Mol Model. 2013. PMID: 23160934

6

Predicting DNA-binding proteins and binding residues by complex structure prediction and application to human proteome.

Zhao H, Wang J, Zhou Y, Yang Y. Zhao H, et al. Among authors: wang j. PLoS One. 2014 May 2;9(5):e96694. doi: 10.1371/journal.pone.0096694. eCollection 2014. PLoS One. 2014. PMID: 24792350 Free PMC article.

7

Characterizing the Free-Energy Landscape of MDM2 Protein-Ligand Interactions by Steered Molecular Dynamics Simulations.

Hu G, Xu S, Wang J. Hu G, et al. Among authors: wang j. Chem Biol Drug Des. 2015 Dec;86(6):1351-9. doi: 10.1111/cbdd.12598. Epub 2015 Jun 15. Chem Biol Drug Des. 2015. PMID: 26032728

8

Revealing the binding modes and the unbinding of 14-3-3σ proteins and inhibitors by computational methods.

Hu G, Cao Z, Xu S, Wang W, Wang J. Hu G, et al. Among authors: wang w, wang j. Sci Rep. 2015 Nov 16;5:16481. doi: 10.1038/srep16481. Sci Rep. 2015. PMID: 26568041 Free PMC article.

9

Genome-scale characterization of RNA tertiary structures and their functional impact by RNA solvent accessibility prediction.

Yang Y, Li X, Zhao H, Zhan J, Wang J, Zhou Y. Yang Y, et al. Among authors: wang j. RNA. 2017 Jan;23(1):14-22. doi: 10.1261/rna.057364.116. Epub 2016 Nov 2. RNA. 2017. PMID: 27807179 Free PMC article.

10

Ligand Selectivity Mechanism and Conformational Changes in Guanine Riboswitch by Molecular Dynamics Simulations and Free Energy Calculations.

Hu G, Ma A, Wang J. Hu G, et al. Among authors: wang j. J Chem Inf Model. 2017 Apr 24;57(4):918-928. doi: 10.1021/acs.jcim.7b00139. Epub 2017 Apr 6. J Chem Inf Model. 2017. PMID: 28345904

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