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A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data.
Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, Vilgalys R, White MM, Stajich JE. Spatafora JW, et al. Among authors: chang y. Mycologia. 2016 Sep;108(5):1028-1046. doi: 10.3852/16-042. Mycologia. 2016. PMID: 27738200 Free PMC article.
Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi).
Davis WJ, Amses KR, Benny GL, Carter-House D, Chang Y, Grigoriev I, Smith ME, Spatafora JW, Stajich JE, James TY. Davis WJ, et al. Among authors: chang y. Mol Phylogenet Evol. 2019 Apr;133:152-163. doi: 10.1016/j.ympev.2019.01.006. Epub 2019 Jan 11. Mol Phylogenet Evol. 2019. PMID: 30639767 Free PMC article.
Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus.
Tabima JF, Trautman IA, Chang Y, Wang Y, Mondo S, Kuo A, Salamov A, Grigoriev IV, Stajich JE, Spatafora JW. Tabima JF, et al. Among authors: chang y. G3 (Bethesda). 2020 Sep 2;10(9):3417-3433. doi: 10.1534/g3.120.401516. G3 (Bethesda). 2020. PMID: 32727924 Free PMC article.
Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses.
Myers JM, Bonds AE, Clemons RA, Thapa NA, Simmons DR, Carter-House D, Ortanez J, Liu P, Miralles-Durán A, Desirò A, Longcore JE, Bonito G, Stajich JE, Spatafora JW, Chang Y, Corrochano LM, Gryganskyi A, Grigoriev IV, James TY. Myers JM, et al. Among authors: chang y. mBio. 2020 Sep 8;11(5):e02027-20. doi: 10.1128/mBio.02027-20. mBio. 2020. PMID: 32900807 Free PMC article.
Erratum for Myers et al., "Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses".
Myers JM, Bonds AE, Clemons RA, Thapa NA, Simmons DR, Carter-House D, Ortanez J, Liu P, Miralles-Durán A, Desirò A, Longcore JE, Bonito G, Stajich JE, Spatafora JW, Chang Y, Corrochano LM, Gryganskyi A, Grigoriev IV, James TY. Myers JM, et al. Among authors: chang y. mBio. 2020 Dec 15;11(6):e02851-20. doi: 10.1128/mBio.02851-20. mBio. 2020. PMID: 33323520 Free PMC article. No abstract available.
A genome-scale phylogeny of the kingdom Fungi.
Li Y, Steenwyk JL, Chang Y, Wang Y, James TY, Stajich JE, Spatafora JW, Groenewald M, Dunn CW, Hittinger CT, Shen XX, Rokas A. Li Y, et al. Among authors: chang y. Curr Biol. 2021 Apr 26;31(8):1653-1665.e5. doi: 10.1016/j.cub.2021.01.074. Epub 2021 Feb 18. Curr Biol. 2021. PMID: 33607033 Free PMC article.
Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, LaButti K, Lang BF, Lipzen A, O'Donnell K, Pangilinan J, Reynolds N, Sandor L, Smith ME, Tsang A, Grigoriev IV, Stajich JE, Spatafora JW. Chang Y, et al. iScience. 2022 Aug 2;25(8):104840. doi: 10.1016/j.isci.2022.104840. eCollection 2022 Aug 19. iScience. 2022. PMID: 35996588 Free PMC article.
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