Donald BR - Search Results

1

Improved energy bound accuracy enhances the efficiency of continuous protein design.

Roberts KE, Donald BR. Roberts KE, et al. Among authors: donald br. Proteins. 2015 Jun;83(6):1151-64. doi: 10.1002/prot.24808. Epub 2015 May 8. Proteins. 2015. PMID: 25846627 Free PMC article.

2

DexDesign: A new OSPREY-based algorithm for designing de novo D-peptide inhibitors.

Guerin N, Childs H, Zhou P, Donald BR. Guerin N, et al. Among authors: donald br. bioRxiv [Preprint]. 2024 Feb 14:2024.02.12.579944. doi: 10.1101/2024.02.12.579944. bioRxiv. 2024. Update in: Protein Eng Des Sel. 2024 Jan 29;37:gzae007. doi: 10.1093/protein/gzae007 PMID: 38405797 Free PMC article. Updated. Preprint.

3

Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2006 Jul 15;22(14):e174-83. doi: 10.1093/bioinformatics/btl220. Bioinformatics. 2006. PMID: 16873469

4

Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing.

Potluri S, Yan AK, Chou JJ, Donald BR, Bailey-Kellogg C. Potluri S, et al. Among authors: donald br. Proteins. 2006 Oct 1;65(1):203-19. doi: 10.1002/prot.21091. Proteins. 2006. PMID: 16897780

5

Dead-end elimination with backbone flexibility.

Georgiev I, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2007 Jul 1;23(13):i185-94. doi: 10.1093/bioinformatics/btm197. Bioinformatics. 2007. PMID: 17646295

6

The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: donald br. J Comput Chem. 2008 Jul 30;29(10):1527-42. doi: 10.1002/jcc.20909. J Comput Chem. 2008. PMID: 18293294 Free PMC article.

7

Algorithm for backrub motions in protein design.

Georgiev I, Keedy D, Richardson JS, Richardson DC, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2008 Jul 1;24(13):i196-204. doi: 10.1093/bioinformatics/btn169. Bioinformatics. 2008. PMID: 18586714 Free PMC article.

8

Computational structure-based redesign of enzyme activity.

Chen CY, Georgiev I, Anderson AC, Donald BR. Chen CY, et al. Among authors: donald br. Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3764-9. doi: 10.1073/pnas.0900266106. Epub 2009 Feb 19. Proc Natl Acad Sci U S A. 2009. PMID: 19228942 Free PMC article.

9

A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns.

Zeng J, Tripathy C, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. Comput Syst Bioinformatics Conf. 2008;7:169-81. Comput Syst Bioinformatics Conf. 2008. PMID: 19642278 Free article.

10

High-resolution protein structure determination starting with a global fold calculated from exact solutions to the RDC equations.

Zeng J, Boyles J, Tripathy C, Wang L, Yan A, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. J Biomol NMR. 2009 Nov;45(3):265-81. doi: 10.1007/s10858-009-9366-3. Epub 2009 Aug 27. J Biomol NMR. 2009. PMID: 19711185 Free PMC article.

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