Zhang D - Search Results

1

An anisotropic coarse-grained model based on Gay-Berne and electric multipole potentials and its application to simulate a DMPC bilayer in an implicit solvent model.

Shen H, Li Y, Xu P, Li X, Chu H, Zhang D, Li G. Shen H, et al. Among authors: zhang d. J Comput Chem. 2015 Jun 5;36(15):1103-13. doi: 10.1002/jcc.23895. Epub 2015 Mar 18. J Comput Chem. 2015. PMID: 25788250

2

Computational studies of difference in binding modes of peptide and non-peptide inhibitors to MDM2/MDMX based on molecular dynamics simulations.

Chen J, Zhang D, Zhang Y, Li G. Chen J, et al. Among authors: zhang d, zhang y. Int J Mol Sci. 2012;13(2):2176-2195. doi: 10.3390/ijms13022176. Epub 2012 Feb 17. Int J Mol Sci. 2012. PMID: 22408446 Free PMC article.

3

Insights into the regulation of human CNV-miRNAs from the view of their target genes.

Wu X, Zhang D, Li G. Wu X, et al. Among authors: zhang d. BMC Genomics. 2012 Dec 18;13:707. doi: 10.1186/1471-2164-13-707. BMC Genomics. 2012. PMID: 23244579 Free PMC article.

4

An Anisotropic Coarse-Grained Model for Proteins Based On Gay-Berne and Electric Multipole Potentials.

Shen H, Li Y, Ren P, Zhang D, Li G. Shen H, et al. Among authors: zhang d. J Chem Theory Comput. 2014 Feb 10;10(2):731-750. doi: 10.1021/ct400974z. J Chem Theory Comput. 2014. PMID: 24659927 Free PMC article.

5

Mechanistic insight into the functional transition of the enzyme guanylate kinase induced by a single mutation.

Zhang Y, Niu H, Li Y, Chu H, Shen H, Zhang D, Li G. Zhang Y, et al. Among authors: zhang d. Sci Rep. 2015 Feb 12;5:8405. doi: 10.1038/srep08405. Sci Rep. 2015. PMID: 25672880 Free PMC article.

6

Ultrafast Tracking of a Single Live Virion During the Invagination of a Cell Membrane.

Pan Y, Wang S, Shan Y, Zhang D, Gao J, Zhang M, Liu S, Cai M, Xu H, Li G, Qin Q, Wang H. Pan Y, et al. Among authors: zhang m, zhang d. Small. 2015 Jun;11(23):2782-8. doi: 10.1002/smll.201403491. Epub 2015 Feb 16. Small. 2015. PMID: 25689837

7

Coarse-Grained Modeling of Nucleic Acids Using Anisotropic Gay-Berne and Electric Multipole Potentials.

Li G, Shen H, Zhang D, Li Y, Wang H. Li G, et al. Among authors: zhang d. J Chem Theory Comput. 2016 Feb 9;12(2):676-93. doi: 10.1021/acs.jctc.5b00903. Epub 2016 Jan 15. J Chem Theory Comput. 2016. PMID: 26717419

8

The Effect of Codon Mismatch on the Protein Translation System.

Zhang D, Chen D, Cao L, Li G, Cheng H. Zhang D, et al. PLoS One. 2016 Feb 3;11(2):e0148302. doi: 10.1371/journal.pone.0148302. eCollection 2016. PLoS One. 2016. PMID: 26840415 Free PMC article.

9

Accurate Evaluation of Ion Conductivity of the Gramicidin A Channel Using a Polarizable Force Field without Any Corrections.

Peng X, Zhang Y, Chu H, Li Y, Zhang D, Cao L, Li G. Peng X, et al. Among authors: zhang d, zhang y. J Chem Theory Comput. 2016 Jun 14;12(6):2973-82. doi: 10.1021/acs.jctc.6b00128. Epub 2016 May 19. J Chem Theory Comput. 2016. PMID: 27171823

10

Integrating Multiple Accelerated Molecular Dynamics To Improve Accuracy of Free Energy Calculations.

Peng X, Zhang Y, Li Y, Liu Q, Chu H, Zhang D, Li G. Peng X, et al. Among authors: zhang d, zhang y. J Chem Theory Comput. 2018 Mar 13;14(3):1216-1227. doi: 10.1021/acs.jctc.7b01211. Epub 2018 Feb 14. J Chem Theory Comput. 2018. PMID: 29394067

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