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Page 1
An ontology approach to comparative phenomics in plants.
Oellrich A, Walls RL, Cannon EK, Cannon SB, Cooper L, Gardiner J, Gkoutos GV, Harper L, He M, Hoehndorf R, Jaiswal P, Kalberer SR, Lloyd JP, Meinke D, Menda N, Moore L, Nelson RT, Pujar A, Lawrence CJ, Huala E. Oellrich A, et al. Among authors: menda n. Plant Methods. 2015 Feb 25;11:10. doi: 10.1186/s13007-015-0053-y. eCollection 2015. Plant Methods. 2015. PMID: 25774204 Free PMC article.
The plant ontology as a tool for comparative plant anatomy and genomic analyses.
Cooper L, Walls RL, Elser J, Gandolfo MA, Stevenson DW, Smith B, Preece J, Athreya B, Mungall CJ, Rensing S, Hiss M, Lang D, Reski R, Berardini TZ, Li D, Huala E, Schaeffer M, Menda N, Arnaud E, Shrestha R, Yamazaki Y, Jaiswal P. Cooper L, et al. Among authors: menda n. Plant Cell Physiol. 2013 Feb;54(2):e1. doi: 10.1093/pcp/pcs163. Epub 2012 Dec 5. Plant Cell Physiol. 2013. PMID: 23220694 Free PMC article.
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C, Cannon S, Carson J, Condon B, Cooper L, Dunn N, Elsik CG, Farmer A, Ficklin SP, Grant D, Grau E, Herndon N, Hu ZL, Humann J, Jaiswal P, Jonquet C, Laporte MA, Larmande P, Lazo G, McCarthy F, Menda N, Mungall CJ, Munoz-Torres MC, Naithani S, Nelson R, Nesdill D, Park C, Reecy J, Reiser L, Sanderson LA, Sen TZ, Staton M, Subramaniam S, Tello-Ruiz MK, Unda V, Unni D, Wang L, Ware D, Wegrzyn J, Williams J, Woodhouse M, Yu J, Main D. Harper L, et al. Among authors: menda n. Database (Oxford). 2018 Jan 1;2018:bay088. doi: 10.1093/database/bay088. Database (Oxford). 2018. PMID: 30239679 Free PMC article.
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl.
Bombarely A, Menda N, Tecle IY, Buels RM, Strickler S, Fischer-York T, Pujar A, Leto J, Gosselin J, Mueller LA. Bombarely A, et al. Among authors: menda n. Nucleic Acids Res. 2011 Jan;39(Database issue):D1149-55. doi: 10.1093/nar/gkq866. Epub 2010 Oct 8. Nucleic Acids Res. 2011. PMID: 20935049 Free PMC article.
The Sol Genomics Network (SGN)--from genotype to phenotype to breeding.
Fernandez-Pozo N, Menda N, Edwards JD, Saha S, Tecle IY, Strickler SR, Bombarely A, Fisher-York T, Pujar A, Foerster H, Yan A, Mueller LA. Fernandez-Pozo N, et al. Among authors: menda n. Nucleic Acids Res. 2015 Jan;43(Database issue):D1036-41. doi: 10.1093/nar/gku1195. Epub 2014 Nov 26. Nucleic Acids Res. 2015. PMID: 25428362 Free PMC article.
The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems.
Arnaud E, Laporte MA, Kim S, Aubert C, Leonelli S, Miro B, Cooper L, Jaiswal P, Kruseman G, Shrestha R, Buttigieg PL, Mungall CJ, Pietragalla J, Agbona A, Muliro J, Detras J, Hualla V, Rathore A, Das RR, Dieng I, Bauchet G, Menda N, Pommier C, Shaw F, Lyon D, Mwanzia L, Juarez H, Bonaiuti E, Chiputwa B, Obileye O, Auzoux S, Yeumo ED, Mueller LA, Silverstein K, Lafargue A, Antezana E, Devare M, King B. Arnaud E, et al. Among authors: menda n. Patterns (N Y). 2020 Sep 25;1(7):100105. doi: 10.1016/j.patter.2020.100105. eCollection 2020 Oct 9. Patterns (N Y). 2020. PMID: 33205138 Free PMC article.
The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond.
Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD. Mueller LA, et al. Among authors: menda n. Plant Physiol. 2005 Jul;138(3):1310-7. doi: 10.1104/pp.105.060707. Plant Physiol. 2005. PMID: 16010005 Free PMC article.
Rose scent: genomics approach to discovering novel floral fragrance-related genes.
Guterman I, Shalit M, Menda N, Piestun D, Dafny-Yelin M, Shalev G, Bar E, Davydov O, Ovadis M, Emanuel M, Wang J, Adam Z, Pichersky E, Lewinsohn E, Zamir D, Vainstein A, Weiss D. Guterman I, et al. Among authors: menda n. Plant Cell. 2002 Oct;14(10):2325-38. doi: 10.1105/tpc.005207. Plant Cell. 2002. PMID: 12368489 Free PMC article.
37 results