Pinto GP - Search Results

1

New insights in the catalytic mechanism of tyrosine ammonia-lyase given by QM/MM and QM cluster models.

Pinto GP, Ribeiro AJ, Ramos MJ, Fernandes PA, Toscano M, Russo N. Pinto GP, et al. Arch Biochem Biophys. 2015 Sep 15;582:107-15. doi: 10.1016/j.abb.2015.03.002. Epub 2015 Mar 12. Arch Biochem Biophys. 2015. PMID: 25772386

2

Establishing the catalytic mechanism of human pancreatic α-amylase with QM/MM methods.

Pinto GP, Brás NF, Perez MA, Fernandes PA, Russo N, Ramos MJ, Toscano M. Pinto GP, et al. J Chem Theory Comput. 2015 Jun 9;11(6):2508-16. doi: 10.1021/acs.jctc.5b00222. J Chem Theory Comput. 2015. PMID: 26575550

3

Triesterase and promiscuous diesterase activities of a di-Co(II)-containing organophosphate degrading enzyme reaction mechanisms.

Alberto ME, Pinto G, Russo N, Toscano M. Alberto ME, et al. Chemistry. 2015 Feb 23;21(9):3736-45. doi: 10.1002/chem.201405593. Epub 2015 Jan 12. Chemistry. 2015. PMID: 25582757

4

Trimethylphosphate and Dimethylphosphate Hydrolysis by Binuclear Cd^II , Mn^II , and Zn^II -Fe^II Promiscuous Organophosphate-Degrading Enzyme: Reaction Mechanisms.

Pinto G, Mazzone G, Russo N, Toscano M. Pinto G, et al. Chemistry. 2017 Oct 4;23(55):13742-13753. doi: 10.1002/chem.201702379. Epub 2017 Aug 30. Chemistry. 2017. PMID: 28661038

5

Engineering enzyme access tunnels.

Kokkonen P, Bednar D, Pinto G, Prokop Z, Damborsky J. Kokkonen P, et al. Biotechnol Adv. 2019 Nov 1;37(6):107386. doi: 10.1016/j.biotechadv.2019.04.008. Epub 2019 Apr 23. Biotechnol Adv. 2019. PMID: 31026496 Free article. Review.

6

Computational design of enzymes for biotechnological applications.

Planas-Iglesias J, Marques SM, Pinto GP, Musil M, Stourac J, Damborsky J, Bednar D. Planas-Iglesias J, et al. Among authors: pinto gp. Biotechnol Adv. 2021 Mar-Apr;47:107696. doi: 10.1016/j.biotechadv.2021.107696. Epub 2021 Jan 26. Biotechnol Adv. 2021. PMID: 33513434 Review.

7

Fast Screening of Inhibitor Binding/Unbinding Using Novel Software Tool CaverDock.

Pinto GP, Vavra O, Filipovic J, Stourac J, Bednar D, Damborsky J. Pinto GP, et al. Front Chem. 2019 Oct 29;7:709. doi: 10.3389/fchem.2019.00709. eCollection 2019. Front Chem. 2019. PMID: 31737596 Free PMC article.

8

The impact of tunnel mutations on enzymatic catalysis depends on the tunnel-substrate complementarity and the rate-limiting step.

Kokkonen P, Slanska M, Dockalova V, Pinto GP, Sánchez-Carnerero EM, Damborsky J, Klán P, Prokop Z, Bednar D. Kokkonen P, et al. Among authors: pinto gp. Comput Struct Biotechnol J. 2020 Mar 25;18:805-813. doi: 10.1016/j.csbj.2020.03.017. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32308927 Free PMC article.

9

Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning.

Pinto GP, Vavra O, Marques SM, Filipovic J, Bednar D, Damborsky J. Pinto GP, et al. Comput Struct Biotechnol J. 2021;19:3187-3197. doi: 10.1016/j.csbj.2021.05.043. Epub 2021 May 26. Comput Struct Biotechnol J. 2021. PMID: 34104357 Free PMC article.

10

Engineering the protein dynamics of an ancestral luciferase.

Schenkmayerova A, Pinto GP, Toul M, Marek M, Hernychova L, Planas-Iglesias J, Daniel Liskova V, Pluskal D, Vasina M, Emond S, Dörr M, Chaloupkova R, Bednar D, Prokop Z, Hollfelder F, Bornscheuer UT, Damborsky J. Schenkmayerova A, et al. Among authors: pinto gp. Nat Commun. 2021 Jun 14;12(1):3616. doi: 10.1038/s41467-021-23450-z. Nat Commun. 2021. PMID: 34127663 Free PMC article.

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