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Computational methodology for ChIP-seq analysis.
Shin H, Liu T, Duan X, Zhang Y, Liu XS. Shin H, et al. Quant Biol. 2013 Mar 1;1(1):54-70. doi: 10.1007/s40484-013-0006-2. Quant Biol. 2013. PMID: 25741452 Free PMC article.
CEAS: cis-regulatory element annotation system.
Shin H, Liu T, Manrai AK, Liu XS. Shin H, et al. Bioinformatics. 2009 Oct 1;25(19):2605-6. doi: 10.1093/bioinformatics/btp479. Epub 2009 Aug 18. Bioinformatics. 2009. PMID: 19689956
Cistrome: an integrative platform for transcriptional regulation studies.
Liu T, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin H, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS. Liu T, et al. Among authors: shin h. Genome Biol. 2011 Aug 22;12(8):R83. doi: 10.1186/gb-2011-12-8-r83. Genome Biol. 2011. PMID: 21859476 Free PMC article.
Nucleosome dynamics define transcriptional enhancers.
He HH, Meyer CA, Shin H, Bailey ST, Wei G, Wang Q, Zhang Y, Xu K, Ni M, Lupien M, Mieczkowski P, Lieb JD, Zhao K, Brown M, Liu XS. He HH, et al. Among authors: shin h. Nat Genet. 2010 Apr;42(4):343-7. doi: 10.1038/ng.545. Epub 2010 Mar 7. Nat Genet. 2010. PMID: 20208536 Free PMC article.
Broad chromosomal domains of histone modification patterns in C. elegans.
Liu T, Rechtsteiner A, Egelhofer TA, Vielle A, Latorre I, Cheung MS, Ercan S, Ikegami K, Jensen M, Kolasinska-Zwierz P, Rosenbaum H, Shin H, Taing S, Takasaki T, Iniguez AL, Desai A, Dernburg AF, Kimura H, Lieb JD, Ahringer J, Strome S, Liu XS. Liu T, et al. Among authors: shin h. Genome Res. 2011 Feb;21(2):227-36. doi: 10.1101/gr.115519.110. Epub 2010 Dec 22. Genome Res. 2011. PMID: 21177964 Free PMC article.
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