Shmulevich I - Search Results

1

Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression.

Turner KM, Sun Y, Ji P, Granberg KJ, Bernard B, Hu L, Cogdell DE, Zhou X, Yli-Harja O, Nykter M, Shmulevich I, Yung WK, Fuller GN, Zhang W. Turner KM, et al. Among authors: shmulevich i. Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3421-6. doi: 10.1073/pnas.1414573112. Epub 2015 Mar 3. Proc Natl Acad Sci U S A. 2015. PMID: 25737557 Free PMC article.

2

Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks.

Shmulevich I, Dougherty ER, Kim S, Zhang W. Shmulevich I, et al. Bioinformatics. 2002 Feb;18(2):261-74. doi: 10.1093/bioinformatics/18.2.261. Bioinformatics. 2002. PMID: 11847074

3

Tumor specific gene expression profiles in human leiomyosarcoma: an evaluation of intratumor heterogeneity.

Shmulevich I, Hunt K, El-Naggar A, Taylor E, Ramdas L, Labordé P, Hess KR, Pollock R, Zhang W. Shmulevich I, et al. Cancer. 2002 Apr 1;94(7):2069-75. doi: 10.1002/cncr.10425. Cancer. 2002. PMID: 11932911 Free article.

4

Binary analysis and optimization-based normalization of gene expression data.

Shmulevich I, Zhang W. Shmulevich I, et al. Bioinformatics. 2002 Apr;18(4):555-65. doi: 10.1093/bioinformatics/18.4.555. Bioinformatics. 2002. PMID: 12016053

5

Gene perturbation and intervention in probabilistic Boolean networks.

Shmulevich I, Dougherty ER, Zhang W. Shmulevich I, et al. Bioinformatics. 2002 Oct;18(10):1319-31. doi: 10.1093/bioinformatics/18.10.1319. Bioinformatics. 2002. PMID: 12376376

6

Identification of combination gene sets for glioma classification.

Kim S, Dougherty ER, Shmulevich I, Hess KR, Hamilton SR, Trent JM, Fuller GN, Zhang W. Kim S, et al. Among authors: shmulevich i. Mol Cancer Ther. 2002 Nov;1(13):1229-36. Mol Cancer Ther. 2002. PMID: 12479704

7

Data extraction from composite oligonucleotide microarrays.

Shmulevich I, Astola J, Cogdell D, Hamilton SR, Zhang W. Shmulevich I, et al. Nucleic Acids Res. 2003 Apr 1;31(7):e36. doi: 10.1093/nar/gng036. Nucleic Acids Res. 2003. PMID: 12655024 Free PMC article.

8

The role of certain Post classes in Boolean network models of genetic networks.

Shmulevich I, Lähdesmäki H, Dougherty ER, Astola J, Zhang W. Shmulevich I, et al. Proc Natl Acad Sci U S A. 2003 Sep 16;100(19):10734-9. doi: 10.1073/pnas.1534782100. Epub 2003 Sep 8. Proc Natl Acad Sci U S A. 2003. PMID: 12963822 Free PMC article.

9

Pathway analysis of informative genes from microarray data reveals that metabolism and signal transduction genes distinguish different subtypes of lymphomas.

Mircean C, Tabus I, Kobayashi T, Yamaguchi M, Shiku H, Shmulevich I, Zhang W. Mircean C, et al. Among authors: shmulevich i. Int J Oncol. 2004 Mar;24(3):497-504. Int J Oncol. 2004. PMID: 14767533

10

Growing genetic regulatory networks from seed genes.

Hashimoto RF, Kim S, Shmulevich I, Zhang W, Bittner ML, Dougherty ER. Hashimoto RF, et al. Among authors: shmulevich i. Bioinformatics. 2004 May 22;20(8):1241-7. doi: 10.1093/bioinformatics/bth074. Epub 2004 Feb 10. Bioinformatics. 2004. PMID: 14871865

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