Blazewicz J - Search Results

1

Automated 3D RNA structure prediction using the RNAComposer method for riboswitches.

Purzycka KJ, Popenda M, Szachniuk M, Antczak M, Lukasiak P, Blazewicz J, Adamiak RW. Purzycka KJ, et al. Among authors: blazewicz j. Methods Enzymol. 2015;553:3-34. doi: 10.1016/bs.mie.2014.10.050. Epub 2015 Feb 4. Methods Enzymol. 2015. PMID: 25726459

2

An algorithm for an automatic NOE pathways analysis of 2D NMR spectra of RNA duplexes.

Adamiak RW, Blazewicz J, Formanowicz P, Gdaniec Z, Kasprzak M, Popenda M, Szachniuk M. Adamiak RW, et al. Among authors: blazewicz j. J Comput Biol. 2004;11(1):163-79. doi: 10.1089/106652704773416948. J Comput Biol. 2004. PMID: 15072694

3

RNA tertiary structure determination: NOE pathways construction by tabu search.

Blazewicz J, Szachniuk M, Wojtowicz A. Blazewicz J, et al. Bioinformatics. 2005 May 15;21(10):2356-61. doi: 10.1093/bioinformatics/bti351. Epub 2005 Feb 24. Bioinformatics. 2005. PMID: 15731205

4

Predicting secondary structures of proteins. Recognizing properties of amino acids with the logical analysis of data algorithm.

Błazewicz J, Hammer PL, Lukasiak P. Błazewicz J, et al. IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):88-94. doi: 10.1109/memb.2005.1436465. IEEE Eng Med Biol Mag. 2005. PMID: 15971846 No abstract available.

5

Application of tabu search strategy for finding low energy structure of protein.

Błazewicz J, Lukasiak P, Miłostan M. Błazewicz J, et al. Artif Intell Med. 2005 Sep-Oct;35(1-2):135-45. doi: 10.1016/j.artmed.2005.02.001. Artif Intell Med. 2005. PMID: 16051476

6

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.

Popenda M, Szachniuk M, Blazewicz M, Wasik S, Burke EK, Blazewicz J, Adamiak RW. Popenda M, et al. Among authors: blazewicz j, blazewicz m. BMC Bioinformatics. 2010 May 6;11:231. doi: 10.1186/1471-2105-11-231. BMC Bioinformatics. 2010. PMID: 20459631 Free PMC article.

7

Automated 3D structure composition for large RNAs.

Popenda M, Szachniuk M, Antczak M, Purzycka KJ, Lukasiak P, Bartol N, Blazewicz J, Adamiak RW. Popenda M, et al. Among authors: blazewicz j. Nucleic Acids Res. 2012 Aug;40(14):e112. doi: 10.1093/nar/gks339. Epub 2012 Apr 26. Nucleic Acids Res. 2012. PMID: 22539264 Free PMC article.

8

GeVaDSs - decision support system for novel Genetic Vaccine development process.

Blazewicz J, Borowski M, Chaara W, Kedziora P, Klatzmann D, Lukasiak P, Six A, Wojciechowski P. Blazewicz J, et al. BMC Bioinformatics. 2012 May 10;13:91. doi: 10.1186/1471-2105-13-91. BMC Bioinformatics. 2012. PMID: 22574945 Free PMC article.

9

RNAlyzer--novel approach for quality analysis of RNA structural models.

Lukasiak P, Antczak M, Ratajczak T, Bujnicki JM, Szachniuk M, Adamiak RW, Popenda M, Blazewicz J. Lukasiak P, et al. Among authors: blazewicz j. Nucleic Acids Res. 2013 Jul;41(12):5978-90. doi: 10.1093/nar/gkt318. Epub 2013 Apr 25. Nucleic Acids Res. 2013. PMID: 23620294 Free PMC article.

10

RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs.

Antczak M, Zok T, Popenda M, Lukasiak P, Adamiak RW, Blazewicz J, Szachniuk M. Antczak M, et al. Among authors: blazewicz j. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W368-72. doi: 10.1093/nar/gku330. Epub 2014 Apr 25. Nucleic Acids Res. 2014. PMID: 24771339 Free PMC article.

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