Babaei S - Search Results

1

3D hotspots of recurrent retroviral insertions reveal long-range interactions with cancer genes.

Babaei S, Akhtar W, de Jong J, Reinders M, de Ridder J. Babaei S, et al. Nat Commun. 2015 Feb 27;6:6381. doi: 10.1038/ncomms7381. Nat Commun. 2015. PMID: 25721899 Free PMC article.

2

Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion.

Babaei S, Hulsman M, Reinders M, de Ridder J. Babaei S, et al. BMC Bioinformatics. 2013 Jan 23;14:29. doi: 10.1186/1471-2105-14-29. BMC Bioinformatics. 2013. PMID: 23343428 Free PMC article.

3

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.

Babaei S, Mahfouz A, Hulsman M, Lelieveldt BP, de Ridder J, Reinders M. Babaei S, et al. PLoS Comput Biol. 2015 May 12;11(5):e1004221. doi: 10.1371/journal.pcbi.1004221. eCollection 2015 May. PLoS Comput Biol. 2015. PMID: 25965262 Free PMC article.

4

Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia.

Taskesen E, Babaei S, Reinders MM, de Ridder J. Taskesen E, et al. Among authors: babaei s. BMC Bioinformatics. 2015;16 Suppl 4(Suppl 4):S5. doi: 10.1186/1471-2105-16-S4-S5. Epub 2015 Feb 23. BMC Bioinformatics. 2015. PMID: 25734246 Free PMC article.

5

Protein secondary structure prediction using modular reciprocal bidirectional recurrent neural networks.

Babaei S, Geranmayeh A, Seyyedsalehi SA. Babaei S, et al. Comput Methods Programs Biomed. 2010 Dec;100(3):237-47. doi: 10.1016/j.cmpb.2010.04.005. Epub 2010 May 15. Comput Methods Programs Biomed. 2010. PMID: 20472322

6

Heart sound reproduction based on neural network classification of cardiac valve disorders using wavelet transforms of PCG signals.

Babaei S, Geranmayeh A. Babaei S, et al. Comput Biol Med. 2009 Jan;39(1):8-15. doi: 10.1016/j.compbiomed.2008.10.004. Epub 2008 Dec 9. Comput Biol Med. 2009. PMID: 19081085

7

Drug Extravasation in a Tertiary Referral Children Hospital: A Prospective Cohort Study.

Amini N, Shirvani N, Babaei S, Rahimi H, Riahi R, Mehraein K, Abtahi-Naeini B. Amini N, et al. Among authors: babaei s. Clin Pediatr (Phila). 2025 Jan 6:99228241304485. doi: 10.1177/00099228241304485. Online ahead of print. Clin Pediatr (Phila). 2025. PMID: 39760195

8

Functional screening reveals genetic dependencies and diverging cell cycle control in atypical teratoid rhabdoid tumors.

Merk DJ, Tsiami F, Hirsch S, Walter B, Haeusser LA, Maile JD, Stahl A, Jarboui MA, Lechado-Terradas A, Klose F, Babaei S, Admard J, Casadei N, Roggia C, Spohn M, Schittenhelm J, Singer S, Schüller U, Piccioni F, Persky NS, Claassen M, Tatagiba M, Kahle PJ, Root DE, Templin M, Tabatabai G. Merk DJ, et al. Among authors: babaei s. Genome Biol. 2024 Dec 2;25(1):301. doi: 10.1186/s13059-024-03438-w. Genome Biol. 2024. PMID: 39617889 Free PMC article.

9

Surveillance and mapping of tribenuron-methyl-resistant weeds in wheat fields.

Tahmasebi BK, Zand E, Yousefi A, Babaei S, Sadeghpour A. Tahmasebi BK, et al. Among authors: babaei s. Sci Rep. 2024 Nov 19;14(1):28626. doi: 10.1038/s41598-024-75308-1. Sci Rep. 2024. PMID: 39562594 Free PMC article.

10

Innovative multi-trial breeding and genotype screening in triticale (x Triticosecale Wittmack) for enhanced stability under drought stress.

Saed-Moucheshi A, Babaei S, Ansarshourijeh F. Saed-Moucheshi A, et al. Among authors: babaei s. Sci Rep. 2024 Nov 16;14(1):28273. doi: 10.1038/s41598-024-79615-5. Sci Rep. 2024. PMID: 39550474 Free PMC article.

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