Skolnick J - Search Results

1

Implications of the small number of distinct ligand binding pockets in proteins for drug discovery, evolution and biochemical function.

Skolnick J, Gao M, Roy A, Srinivasan B, Zhou H. Skolnick J, et al. Bioorg Med Chem Lett. 2015 Mar 15;25(6):1163-70. doi: 10.1016/j.bmcl.2015.01.059. Epub 2015 Feb 3. Bioorg Med Chem Lett. 2015. PMID: 25690787 Free PMC article. Review.

2

Ab initio protein structure prediction using chunk-TASSER.

Zhou H, Skolnick J. Zhou H, et al. Among authors: skolnick j. Biophys J. 2007 Sep 1;93(5):1510-8. doi: 10.1529/biophysj.107.109959. Epub 2007 May 11. Biophys J. 2007. PMID: 17496016 Free PMC article.

3

What is the relationship between the global structures of apo and holo proteins?

Brylinski M, Skolnick J. Brylinski M, et al. Among authors: skolnick j. Proteins. 2008 Feb 1;70(2):363-77. doi: 10.1002/prot.21510. Proteins. 2008. PMID: 17680687

4

Analysis of TASSER-based CASP7 protein structure prediction results.

Zhou H, Pandit SB, Lee SY, Borreguero J, Chen H, Wroblewska L, Skolnick J. Zhou H, et al. Among authors: skolnick j. Proteins. 2007;69 Suppl 8:90-7. doi: 10.1002/prot.21649. Proteins. 2007. PMID: 17705276

5

Protein model quality assessment prediction by combining fragment comparisons and a consensus C(alpha) contact potential.

Zhou H, Skolnick J. Zhou H, et al. Among authors: skolnick j. Proteins. 2008 May 15;71(3):1211-8. doi: 10.1002/prot.21813. Proteins. 2008. PMID: 18004783 Free PMC article.

6

A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation.

Brylinski M, Skolnick J. Brylinski M, et al. Among authors: skolnick j. Proc Natl Acad Sci U S A. 2008 Jan 8;105(1):129-34. doi: 10.1073/pnas.0707684105. Epub 2007 Dec 28. Proc Natl Acad Sci U S A. 2008. PMID: 18165317 Free PMC article.

7

Assessment of programs for ligand binding affinity prediction.

Kim R, Skolnick J. Kim R, et al. Among authors: skolnick j. J Comput Chem. 2008 Jun;29(8):1316-31. doi: 10.1002/jcc.20893. J Comput Chem. 2008. PMID: 18172838 Free PMC article.

8

Q-Dock: Low-resolution flexible ligand docking with pocket-specific threading restraints.

Brylinski M, Skolnick J. Brylinski M, et al. Among authors: skolnick j. J Comput Chem. 2008 Jul 30;29(10):1574-88. doi: 10.1002/jcc.20917. J Comput Chem. 2008. PMID: 18293308 Free PMC article.

9

Benchmarking of TASSER_2.0: an improved protein structure prediction algorithm with more accurate predicted contact restraints.

Lee SY, Skolnick J. Lee SY, et al. Among authors: skolnick j. Biophys J. 2008 Aug;95(4):1956-64. doi: 10.1529/biophysj.108.129759. Epub 2008 May 16. Biophys J. 2008. PMID: 18487301 Free PMC article.

10

DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions.

Gao M, Skolnick J. Gao M, et al. Among authors: skolnick j. Nucleic Acids Res. 2008 Jul;36(12):3978-92. doi: 10.1093/nar/gkn332. Epub 2008 May 31. Nucleic Acids Res. 2008. PMID: 18515839 Free PMC article.

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