Gregory BD - Search Results

1

Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis.

Li S, Vandivier LE, Tu B, Gao L, Won SY, Li S, Zheng B, Gregory BD, Chen X. Li S, et al. Among authors: gregory bd. Genome Res. 2015 Feb;25(2):235-45. doi: 10.1101/gr.182238.114. Epub 2014 Nov 20. Genome Res. 2015. PMID: 25414514 Free PMC article.

2

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis.

Zheng Q, Ryvkin P, Li F, Dragomir I, Valladares O, Yang J, Cao K, Wang LS, Gregory BD. Zheng Q, et al. Among authors: gregory bd. PLoS Genet. 2010 Sep 30;6(9):e1001141. doi: 10.1371/journal.pgen.1001141. PLoS Genet. 2010. PMID: 20941385 Free PMC article.

3

Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome.

Wierzbicki AT, Cocklin R, Mayampurath A, Lister R, Rowley MJ, Gregory BD, Ecker JR, Tang H, Pikaard CS. Wierzbicki AT, et al. Among authors: gregory bd. Genes Dev. 2012 Aug 15;26(16):1825-36. doi: 10.1101/gad.197772.112. Epub 2012 Aug 1. Genes Dev. 2012. PMID: 22855789 Free PMC article.

4

Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome.

Li F, Zheng Q, Vandivier LE, Willmann MR, Chen Y, Gregory BD. Li F, et al. Among authors: gregory bd. Plant Cell. 2012 Nov;24(11):4346-59. doi: 10.1105/tpc.112.104232. Epub 2012 Nov 13. Plant Cell. 2012. PMID: 23150631 Free PMC article.

5

Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants.

Silverman IM, Li F, Gregory BD. Silverman IM, et al. Among authors: gregory bd. Plant Sci. 2013 May;205-206:55-62. doi: 10.1016/j.plantsci.2013.01.009. Epub 2013 Feb 1. Plant Sci. 2013. PMID: 23498863 Free PMC article. Review.

6

Arabidopsis mRNA secondary structure correlates with protein function and domains.

Vandivier L, Li F, Zheng Q, Willmann M, Chen Y, Gregory B. Vandivier L, et al. Plant Signal Behav. 2013 Jun;8(6):e24301. doi: 10.4161/psb.24301. Epub 2013 Apr 19. Plant Signal Behav. 2013. PMID: 23603972 Free PMC article.

7

Essential Role for endogenous siRNAs during meiosis in mouse oocytes.

Stein P, Rozhkov NV, Li F, Cárdenas FL, Davydenko O, Vandivier LE, Gregory BD, Hannon GJ, Schultz RM. Stein P, et al. Among authors: gregory bd. PLoS Genet. 2015 Feb 19;11(2):e1005013. doi: 10.1371/journal.pgen.1005013. eCollection 2015 Feb. PLoS Genet. 2015. PMID: 25695507 Free PMC article.

8

High-throughput nuclease-mediated probing of RNA secondary structure in plant transcriptomes.

Vandivier LE, Li F, Gregory BD. Vandivier LE, et al. Among authors: gregory bd. Methods Mol Biol. 2015;1284:41-70. doi: 10.1007/978-1-4939-2444-8_3. Methods Mol Biol. 2015. PMID: 25757767

9

Transcriptome-wide measurement of plant RNA secondary structure.

Foley SW, Vandivier LE, Kuksa PP, Gregory BD. Foley SW, et al. Among authors: gregory bd. Curr Opin Plant Biol. 2015 Oct;27:36-43. doi: 10.1016/j.pbi.2015.05.021. Epub 2015 Jun 26. Curr Opin Plant Biol. 2015. PMID: 26119389 Free PMC article. Review.

10

Chemical Modifications Mark Alternatively Spliced and Uncapped Messenger RNAs in Arabidopsis.

Vandivier LE, Campos R, Kuksa PP, Silverman IM, Wang LS, Gregory BD. Vandivier LE, et al. Among authors: gregory bd. Plant Cell. 2015 Nov;27(11):3024-37. doi: 10.1105/tpc.15.00591. Epub 2015 Nov 11. Plant Cell. 2015. PMID: 26561561 Free PMC article.

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