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Bayesian identification of bacterial strains from sequencing data.
Sankar A, Malone B, Bayliss SC, Pascoe B, Méric G, Hitchings MD, Sheppard SK, Feil EJ, Corander J, Honkela A. Sankar A, et al. Microb Genom. 2016 Aug 25;2(8):e000075. doi: 10.1099/mgen.0.000075. eCollection 2016 Aug. Microb Genom. 2016. PMID: 28348870 Free PMC article.
Epistasis analysis uncovers hidden antibiotic resistance-associated fitness costs hampering the evolution of MRSA.
Yokoyama M, Stevens E, Laabei M, Bacon L, Heesom K, Bayliss S, Ooi N, O'Neill AJ, Murray E, Williams P, Lubben A, Reeksting S, Meric G, Pascoe B, Sheppard SK, Recker M, Hurst LD, Massey RC. Yokoyama M, et al. Among authors: bayliss s. Genome Biol. 2018 Jul 18;19(1):94. doi: 10.1186/s13059-018-1469-2. Genome Biol. 2018. PMID: 30021593 Free PMC article.
Gene pool transmission of multidrug resistance among Campylobacter from livestock, sewage and human disease.
Mourkas E, Florez-Cuadrado D, Pascoe B, Calland JK, Bayliss SC, Mageiros L, Méric G, Hitchings MD, Quesada A, Porrero C, Ugarte-Ruiz M, Gutiérrez-Fernández J, Domínguez L, Sheppard SK. Mourkas E, et al. Environ Microbiol. 2019 Dec;21(12):4597-4613. doi: 10.1111/1462-2920.14760. Epub 2019 Aug 27. Environ Microbiol. 2019. PMID: 31385413 Free PMC article.
Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni.
Mourkas E, Taylor AJ, Méric G, Bayliss SC, Pascoe B, Mageiros L, Calland JK, Hitchings MD, Ridley A, Vidal A, Forbes KJ, Strachan NJC, Parker CT, Parkhill J, Jolley KA, Cody AJ, Maiden MCJ, Kelly DJ, Sheppard SK. Mourkas E, et al. Proc Natl Acad Sci U S A. 2020 May 19;117(20):11018-11028. doi: 10.1073/pnas.1917168117. Epub 2020 May 4. Proc Natl Acad Sci U S A. 2020. PMID: 32366649 Free PMC article.
271 results