Goto S - Search Results

1

PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list.

Kotera M, Nishimura Y, Nakagawa Z, Muto A, Moriya Y, Okamoto S, Kawashima S, Katayama T, Tokimatsu T, Kanehisa M, Goto S. Kotera M, et al. Among authors: goto s. J Bioinform Comput Biol. 2014 Dec;12(6):1442001. doi: 10.1142/S0219720014420013. J Bioinform Comput Biol. 2014. PMID: 25385078

2

Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs.

Moriya Y, Yamada T, Okuda S, Nakagawa Z, Kotera M, Tokimatsu T, Kanehisa M, Goto S. Moriya Y, et al. Among authors: goto s. J Chem Inf Model. 2016 Mar 28;56(3):510-6. doi: 10.1021/acs.jcim.5b00216. Epub 2016 Feb 17. J Chem Inf Model. 2016. PMID: 26822930

3

Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions.

Kotera M, Okuno Y, Hattori M, Goto S, Kanehisa M. Kotera M, et al. Among authors: goto s. J Am Chem Soc. 2004 Dec 22;126(50):16487-98. doi: 10.1021/ja0466457. J Am Chem Soc. 2004. PMID: 15600352

4

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.

Yamanishi Y, Hattori M, Kotera M, Goto S, Kanehisa M. Yamanishi Y, et al. Among authors: goto s. Bioinformatics. 2009 Jun 15;25(12):i179-86. doi: 10.1093/bioinformatics/btp223. Bioinformatics. 2009. PMID: 19477985 Free PMC article.

5

Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach.

Kotera M, Tabei Y, Yamanishi Y, Muto A, Moriya Y, Tokimatsu T, Goto S. Kotera M, et al. Among authors: goto s. Bioinformatics. 2014 Jun 15;30(12):i165-74. doi: 10.1093/bioinformatics/btu265. Bioinformatics. 2014. PMID: 24931980 Free PMC article.

6

Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis.

Kotera M, Goto S. Kotera M, et al. Among authors: goto s. Biophys Physicobiol. 2016 Jul 15;13:195-205. doi: 10.2142/biophysico.13.0_195. eCollection 2016. Biophys Physicobiol. 2016. PMID: 27924274 Free PMC article. Review.

7

MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites.

Kotera M, Tokimatsu T, Kanehisa M, Goto S. Kotera M, et al. Among authors: goto s. BMC Bioinformatics. 2011 Dec 14;12 Suppl 14(Suppl 14):S1. doi: 10.1186/1471-2105-12-S14-S1. BMC Bioinformatics. 2011. PMID: 22373367 Free PMC article.

8

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.

Nakaya A, Katayama T, Itoh M, Hiranuka K, Kawashima S, Moriya Y, Okuda S, Tanaka M, Tokimatsu T, Yamanishi Y, Yoshizawa AC, Kanehisa M, Goto S. Nakaya A, et al. Among authors: goto s. Nucleic Acids Res. 2013 Jan;41(Database issue):D353-7. doi: 10.1093/nar/gks1239. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193276 Free PMC article.

9

Modular architecture of metabolic pathways revealed by conserved sequences of reactions.

Muto A, Kotera M, Tokimatsu T, Nakagawa Z, Goto S, Kanehisa M. Muto A, et al. Among authors: goto s. J Chem Inf Model. 2013 Mar 25;53(3):613-22. doi: 10.1021/ci3005379. Epub 2013 Feb 19. J Chem Inf Model. 2013. PMID: 23384306 Free PMC article.

10

Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets.

Kotera M, Tabei Y, Yamanishi Y, Tokimatsu T, Goto S. Kotera M, et al. Among authors: goto s. Bioinformatics. 2013 Jul 1;29(13):i135-44. doi: 10.1093/bioinformatics/btt244. Bioinformatics. 2013. PMID: 23812977 Free PMC article.

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