Erb I - Search Results

1

Alignathon: a competitive assessment of whole-genome alignment methods.

Earl D, Nguyen N, Hickey G, Harris RS, Fitzgerald S, Beal K, Seledtsov I, Molodtsov V, Raney BJ, Clawson H, Kim J, Kemena C, Chang JM, Erb I, Poliakov A, Hou M, Herrero J, Kent WJ, Solovyev V, Darling AE, Ma J, Notredame C, Brudno M, Dubchak I, Haussler D, Paten B. Earl D, et al. Among authors: erb i. Genome Res. 2014 Dec;24(12):2077-89. doi: 10.1101/gr.174920.114. Epub 2014 Oct 1. Genome Res. 2014. PMID: 25273068 Free PMC article.

2

T-Coffee: Tree-based consistency objective function for alignment evaluation.

Magis C, Taly JF, Bussotti G, Chang JM, Di Tommaso P, Erb I, Espinosa-Carrasco J, Notredame C. Magis C, et al. Among authors: erb i. Methods Mol Biol. 2014;1079:117-29. doi: 10.1007/978-1-62703-646-7_7. Methods Mol Biol. 2014. PMID: 24170398

3

Multiple sequence alignment modeling: methods and applications.

Chatzou M, Magis C, Chang JM, Kemena C, Bussotti G, Erb I, Notredame C. Chatzou M, et al. Among authors: erb i. Brief Bioinform. 2016 Nov;17(6):1009-1023. doi: 10.1093/bib/bbv099. Epub 2015 Nov 27. Brief Bioinform. 2016. PMID: 26615024 Review.

4

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures.

Taly JF, Magis C, Bussotti G, Chang JM, Di Tommaso P, Erb I, Espinosa-Carrasco J, Kemena C, Notredame C. Taly JF, et al. Among authors: erb i. Nat Protoc. 2011 Nov;6(11):1669-82. doi: 10.1038/nprot.2011.393. Nat Protoc. 2011. PMID: 21979275

5

Use of ChIP-Seq data for the design of a multiple promoter-alignment method.

Erb I, González-Vallinas JR, Bussotti G, Blanco E, Eyras E, Notredame C. Erb I, et al. Nucleic Acids Res. 2012 Apr;40(7):e52. doi: 10.1093/nar/gkr1292. Epub 2012 Jan 9. Nucleic Acids Res. 2012. PMID: 22230796 Free PMC article.

6

Multiple Sequence Alignment Computation Using the T-Coffee Regressive Algorithm Implementation.

Garriga E, Di Tommaso P, Magis C, Erb I, Mansouri L, Baltzis A, Floden E, Notredame C. Garriga E, et al. Among authors: erb i. Methods Mol Biol. 2021;2231:89-97. doi: 10.1007/978-1-0716-1036-7_6. Methods Mol Biol. 2021. PMID: 33289888

7

How should we measure proportionality on relative gene expression data?

Erb I, Notredame C. Erb I, et al. Theory Biosci. 2016 Jun;135(1-2):21-36. doi: 10.1007/s12064-015-0220-8. Epub 2016 Jan 13. Theory Biosci. 2016. PMID: 26762323 Free PMC article.

8

Efficient and interpretable prediction of protein functional classes by correspondence analysis and compact set relations.

Chang JM, Taly JF, Erb I, Sung TY, Hsu WL, Tang CY, Notredame C, Su EC. Chang JM, et al. Among authors: erb i. PLoS One. 2013 Oct 11;8(10):e75542. doi: 10.1371/journal.pone.0075542. eCollection 2013. PLoS One. 2013. PMID: 24146760 Free PMC article.

9

Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards.

Espinosa-Carrasco J, Pulido TH, Erb I, Dierssen M, Ponomarenko J, Notredame C. Espinosa-Carrasco J, et al. Among authors: erb i. Nucleic Acids Res. 2019 Jul 2;47(W1):W600-W604. doi: 10.1093/nar/gkz414. Nucleic Acids Res. 2019. PMID: 31106365 Free PMC article.

10

Large multiple sequence alignments with a root-to-leaf regressive method.

Garriga E, Di Tommaso P, Magis C, Erb I, Mansouri L, Baltzis A, Laayouni H, Kondrashov F, Floden E, Notredame C. Garriga E, et al. Among authors: erb i. Nat Biotechnol. 2019 Dec;37(12):1466-1470. doi: 10.1038/s41587-019-0333-6. Epub 2019 Dec 2. Nat Biotechnol. 2019. PMID: 31792410 Free PMC article.

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